NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS93866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93866.1 Public Homo sapiens 6 KDM1B 24 110 108 CCDS HistoryNCBI Gene:221656Re-query CCDS DB by CCDS ID:93866.1Re-query CCDS DB by GeneID:221656See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93866.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000650836.2 ENSP00000499208.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000650836.2Link to Ensembl Protein Viewer:ENSP00000499208.1Re-query CCDS DB by Nucleotide ID:ENST00000650836Re-query CCDS DB by Protein ID:ENSP00000499208
Original member Current member NCBI NM_001364614.2 NP_001351543.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001364614.2Link to Protein Sequence:NP_001351543.1Re-query CCDS DB by Nucleotide ID:NM_001364614Re-query CCDS DB by Protein ID:NP_001351543Link to BLAST:NP_001351543.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351543.1 822 Q8NB78-1 822 100% 0 0

Chromosomal Locations for CCDS 93866.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 18159896 18159982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18161327 18161454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18162835 18162924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18166267 18166378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18171363 18171479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18185772 18185810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18187792 18188002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18191197 18191381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18197057 18197233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18197587 18197661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18200439 18200576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18201486 18201657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18205537 18205664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18207398 18207529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18208132 18208206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18212488 18212604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18213656 18213781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18215007 18215129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18217733 18217885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18221909 18221992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGGCAACTCCACGGGGGAGGACAAAGAAAAAAGCATCTTTTGATCATTCTCCGGATAGCCTTCCTTTGA
GGAGCTCCGGTAGGCAGGCGAAGAAGAAAGCAACAGAGACAACAGATGAGGATGAAGATGGTGGCTCAGA
GAAGAAGTACAGGAAATGTGAAAAGGCAGGCTGTACGGCAACATGTCCTGTGTGCTTTGCAAGTGCTTCT
GAAAGATGTGCCAAAAATGGCTACACCTCCCGATGGTATCATCTCTCCTGTGGGGAACATTTCTGTAATG
AATGCTTTGACCATTACTACAGAAGCCATAAGGATGGATATGACAAATATACTACATGGAAAAAAATATG
GACTAGCAATGGCAAAACCGAACCTAGTCCCAAAGCTTTCATGGCAGACCAGCAACTCCCCTACTGGGTT
CAGTGTACAAAACCTGAGTGTAGAAAATGGAGGCAGCTTACCAAGGAAATCCAGCTTACTCCACAGATAG
CCAAGACTTATCGATGCGGTATGAAACCAAATACTGCTATTAAGCCTGAGACCTCAGATCATTGTTCCCT
CCCAGAGGATCTAAGAGTATTGGAAGTTTCCAACCATTGGTGGTACTCTATGCTCATCCTACCTCCTTTG
CTGAAAGACAGTGTGGCAGCGCCCCTGCTGTCTGCCTACTACCCTGACTGTGTTGGCATGAGCCCCTCCT
GCACCAGCACAAACCGCGCCGCTGCCACTGGCAATGCCAGCCCTGGGAAGCTGGAGCACTCCAAGGCTGC
CCTCTCCGTGCACGTTCCAGGCATGAACCGATACTTCCAGCCTTTCTACCAGCCCAATGAGTGTGGCAAA
GCCCTCTGTGTGAGGCCGGATGTGATGGAACTGGATGAGCTCTATGAGTTTCCAGAGTATTCCCGAGACC
CCACCATGTACCTGGCTTTGAGAAACCTCATCCTCGCACTGTGGTATACTAACTGCAAAGAAGCTCTTAC
TCCTCAGAAATGTATTCCTCACATCATCGTCCGGGGTCTCGTGCGTATTCGATGCGTTCAGGAAGTGGAG
AGAATACTGTATTTTATGACCAGAAAAGGTCTCATCAACACTGGAGTTCTCAGCGTGGGAGCCGACCAGT
ATCTTCTCCCTAAGGACTACCACAATAAATCAGTCATCATTATCGGGGCTGGTCCAGCAGGATTAGCAGC
TGCTAGGCAACTGCATAACTTTGGAATTAAGGTGACTGTCCTGGAAGCCAAAGACAGAATTGGAGGCCGA
GTCTGGGATGATAAATCTTTTAAAGGCGTCACAGTGGGAAGAGGAGCTCAGATTGTCAATGGGTGTATTA
ACAACCCAGTAGCATTAATGTGTGAACAACTTGGCATCAGCATGCATAAATTTGGAGAAAGATGTGACTT
AATTCAGGAAGGTGGAAGAATAACTGACCCCACTATTGACAAGCGCATGGATTTTCATTTTAATGCTCTC
TTGGATGTTGTCTCTGAGTGGAGAAAGGATAAGACTCAGCTCCAAGATGTCCCTTTAGGAGAAAAGATAG
AAGAAATCTACAAGGCATTTATTAAGGAATCTGGTATCCAATTCAGTGAGCTGGAGGGACAGGTGCTTCA
GTTCCATCTCAGTAACCTGGAGTACGCCTGTGGCAGCAACCTTCACCAGGTATCTGCTCGCTCGTGGGAC
CACAATGAATTCTTTGCCCAGTTTGCTGGTGACCACACTCTGCTAACTCCCGGGTACTCGGTGATAATTG
AAAAACTGGCAGAAGGGCTTGACATTCAACTCAAATCTCCAGTGCAGTGTATTGATTATTCTGGAGATGA
AGTGCAGGTTACCACTACAGATGGCACAGGGTATTCTGCACAAAAGGTATTAGTCACTGTACCACTGGCT
TTACTACAGAAAGGTGCCATTCAGTTTAATCCACCGTTGTCAGAGAAGAAGATGAAGGCTATCAACAGCT
TAGGCGCAGGCATCATTGAAAAGATTGCCTTGCAATTTCCGTATAGATTTTGGGACAGTAAAGTACAAGG
GGCTGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGGCTTTTTGCCGTGTTCTATGACATG
GATCCCCAGAAGAAGCACAGCGTGCTGATGTCTGTGATTGCCGGGGAGGCTGTCGCATCCGTGAGGACCC
TGGATGACAAACAGGTGCTGCAGCAGTGCATGGCCACGCTCCGGGAGCTGTTCAAGGAGCAGGAGGTCCC
AGATCCCACAAAGTATTTTGTCACTCGGTGGAGCACAGACCCATGGATCCAGATGGCATACAGTTTTGTG
AAGACAGGTGGAAGTGGGGAGGCCTACGATATCATTGCTGAAGACATTCAAGGAACCGTCTTTTTCGCTG
GTGAGGCAACAAACAGGCATTTCCCACAAACTGTTACAGGGGCATATTTGAGTGGCGTTCGAGAAGCAAG
CAAGATTGCAGCATTTTAA

Translation (822 aa):
MATPRGRTKKKASFDHSPDSLPLRSSGRQAKKKATETTDEDEDGGSEKKYRKCEKAGCTATCPVCFASAS
ERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGYDKYTTWKKIWTSNGKTEPSPKAFMADQQLPYWV
QCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLRVLEVSNHWWYSMLILPPL
LKDSVAAPLLSAYYPDCVGMSPSCTSTNRAAATGNASPGKLEHSKAALSVHVPGMNRYFQPFYQPNECGK
ALCVRPDVMELDELYEFPEYSRDPTMYLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVRIRCVQEVE
RILYFMTRKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGR
VWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKFGERCDLIQEGGRITDPTIDKRMDFHFNAL
LDVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWD
HNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLA
LLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDM
DPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFV
KTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH