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Report for CCDS93903.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93903.1 Public Homo sapiens 6 PNPLA1 24 110 108 CCDS HistoryNCBI Gene:285848Re-query CCDS DB by CCDS ID:93903.1Re-query CCDS DB by GeneID:285848See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 93903.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000636260.2 ENSP00000490785.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000636260.2Link to Ensembl Protein Viewer:ENSP00000490785.2Re-query CCDS DB by Nucleotide ID:ENST00000636260Re-query CCDS DB by Protein ID:ENSP00000490785
Original member Current member NCBI NM_001374623.1 NP_001361552.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001374623.1Link to Protein Sequence:NP_001361552.1Re-query CCDS DB by Nucleotide ID:NM_001374623Re-query CCDS DB by Protein ID:NP_001361552Link to BLAST:NP_001361552.1

Chromosomal Locations for CCDS 93903.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36270460 36270664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36291320 36291552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36293061 36293126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36294190 36294399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36295364 36295424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36301861 36302469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36306292 36306376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36307587 36307712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36311763 36311886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGGAAGAACAGGTGTTCAAGGGGGACCCGGACACCCCTCACTCCATCTCCTTCTCGGGCAGTGGATTCC
TCTCCTTCTACCAGGCGGGGGCTGTGGACGCCCTGCGGGACCTGGCCCCCCGGATGCTGGAAACAGCCCA
CCGCTTTGCGGGGACATCGGCAGGTGCTGTGATCGCCGCCCTGGCCATCTGCGGGATTGAAATGGATGAG
TATCTCAGAGTCCTCAACGTGGGTGTGGCCGAGGTGAAGAAATCCTTCCTGGGGCCCTTGTCCCCGTCCT
GTAAGATGGTGCAGATGATGAGGCAGTTTCTGTACCGGGTCCTGCCCGAGGACTCCTACAAGGTCACCAC
GGGGAAGCTCCATGTGAGCCTCACCCGCTTAACGGACGGGGAGAATGTGGTGGTTTCAGAGTTCACGTCC
AAGGAGGAGCTCATTGAGGCCCTATACTGCAGCTGCTTCGTCCCGGTGTACTGTGGCCTCATCCCCCCGA
CTTACCGCGGTGTGAGGTACATCGATGGGGGCTTCACGGGCATGCAGCCCTGTGCCTTCTGGACCGACGC
CATCACCATCTCCACCTTCAGTGGGCAGCAGGACATCTGTCCCCGGGACTGCCCGGCCATCTTCCACGAC
TTCCGCATGTTCAACTGCTCCTTCCAGTTCTCCCTGGAGAACATCGCCAGGATGACCCACGCATTGTTCC
CCCCGGACCTGGTGATCCTGCACGATTACTACTACCGAGGGTACGAGGATGCAGTTTTGTACTTGAGGCG
GCTGAATGCTGTTTATCTTAATTCTTCCTCCAAGAGAGTGATTTTCCCCCGGGTGGAAGTGTACTGCCAG
ATAGAACTCGCCCTTGGCAATGAGTGCCCTGAACGCAGTCAACCAAGCCTTCGAGCACGGCAGGCCAGTC
TGGAAGGAGCCACACAACCTCACAAGGAGTGGGTTCCCAAAGGGGATGGAAGGGGCAGCCATGGTCCGCC
TGTGTCCCAACCTGTGCAGACACTTGAATTCACATGCGAGTCACCTGTTTCAGCACCAGTCTCTCCACTT
GAGCAGCCACCTGCACAGCCACTGGCCTCTTCAACTCCACTTTCTCTAAGTGGCATGCCACCTGTATCAT
TCCCAGCTGTGCACAAGCCACCCAGCTCCACACCTGGTTCATCACTGCCCACCCCACCACCTGGACTGTC
ACCTCTGTCACCTCAGCAGCAGGTACAACCGTCTGGATCACCAGCCAGATCCCTACACTCTCAGGCACCC
ACTTCACCCAGGCCATCCCTGGGGCCTTCAACTGTGGGGGCACCTCAAACACTGCCCCGAAGTTCTCTTT
CAGCCTTCCCTGCTCAGCCACCTGTGGAGGAACTAGGCCAAGAACAGCCCCAAGCTGTAGCTCTTCTTGT
CTCTTCAAAACCAAAAAGCGCCGTGCCTCTGGTTCATGTGAAGGAAACCGTCAGCAAGCCTTATGTAACG
GAGAGCCCTGCTGAAGACTCAAACTGGGTGAATAAGGTCTTCAAGAAGAACAAGCAAAAGACAAGTGGCA
CCAGAAAAGGCTTCCCAAGACATTCGGGATCCAAAAAACCAAGCAGCAAAGTGCAGTCTGCTCCCTGCCC
ACTCAACTTCCCTCTGCTCTCCACTTCTGAGACAGTTTGGGTCACCTACAGACCTCATCCCAGCCGGATC
CAGGAATGCTGCCCTGAAGTGTGGAATTCCTTAGGATGA

Translation (572 aa):
MEEQVFKGDPDTPHSISFSGSGFLSFYQAGAVDALRDLAPRMLETAHRFAGTSAGAVIAALAICGIEMDE
YLRVLNVGVAEVKKSFLGPLSPSCKMVQMMRQFLYRVLPEDSYKVTTGKLHVSLTRLTDGENVVVSEFTS
KEELIEALYCSCFVPVYCGLIPPTYRGVRYIDGGFTGMQPCAFWTDAITISTFSGQQDICPRDCPAIFHD
FRMFNCSFQFSLENIARMTHALFPPDLVILHDYYYRGYEDAVLYLRRLNAVYLNSSSKRVIFPRVEVYCQ
IELALGNECPERSQPSLRARQASLEGATQPHKEWVPKGDGRGSHGPPVSQPVQTLEFTCESPVSAPVSPL
EQPPAQPLASSTPLSLSGMPPVSFPAVHKPPSSTPGSSLPTPPPGLSPLSPQQQVQPSGSPARSLHSQAP
TSPRPSLGPSTVGAPQTLPRSSLSAFPAQPPVEELGQEQPQAVALLVSSKPKSAVPLVHVKETVSKPYVT
ESPAEDSNWVNKVFKKNKQKTSGTRKGFPRHSGSKKPSSKVQSAPCPLNFPLLSTSETVWVTYRPHPSRI
QECCPEVWNSLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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