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Report for CCDS9391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9391.1 Public Homo sapiens 13 LACC1 24 110 108 CCDS HistoryNCBI Gene:144811Re-query CCDS DB by CCDS ID:9391.1Re-query CCDS DB by GeneID:144811See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9391.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325686.7 ENSP00000317619.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325686.7Link to Ensembl Protein Viewer:ENSP00000317619.5Re-query CCDS DB by Nucleotide ID:ENST00000325686Re-query CCDS DB by Protein ID:ENSP00000317619
Original member Current member EBI ENST00000441843.5 ENSP00000391747.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441843.5Link to Ensembl Protein Viewer:ENSP00000391747.1Re-query CCDS DB by Nucleotide ID:ENST00000441843Re-query CCDS DB by Protein ID:ENSP00000391747
Original member Current member NCBI NM_001128303.2 NP_001121775.1 Accepted alive Link to Nucleotide Sequence:NM_001128303.2Link to Protein Sequence:NP_001121775.1Re-query CCDS DB by Nucleotide ID:NM_001128303Re-query CCDS DB by Protein ID:NP_001121775Link to BLAST:NP_001121775.1
Original member Current member NCBI NM_001350638.2 NP_001337567.1 Accepted alive Link to Nucleotide Sequence:NM_001350638.2Link to Protein Sequence:NP_001337567.1Re-query CCDS DB by Nucleotide ID:NM_001350638Re-query CCDS DB by Protein ID:NP_001337567Link to BLAST:NP_001337567.1
Original member Current member NCBI NM_001350639.2 NP_001337568.1 Accepted alive Link to Nucleotide Sequence:NM_001350639.2Link to Protein Sequence:NP_001337568.1Re-query CCDS DB by Nucleotide ID:NM_001350639Re-query CCDS DB by Protein ID:NP_001337568Link to BLAST:NP_001337568.1
Original member Current member NCBI NM_001350640.2 NP_001337569.1 Accepted alive Link to Nucleotide Sequence:NM_001350640.2Link to Protein Sequence:NP_001337569.1Re-query CCDS DB by Nucleotide ID:NM_001350640Re-query CCDS DB by Protein ID:NP_001337569Link to BLAST:NP_001337569.1
Original member Current member NCBI NM_001350641.2 NP_001337570.1 Accepted alive Link to Nucleotide Sequence:NM_001350641.2Link to Protein Sequence:NP_001337570.1Re-query CCDS DB by Nucleotide ID:NM_001350641Re-query CCDS DB by Protein ID:NP_001337570Link to BLAST:NP_001337570.1
Original member Current member NCBI NM_001350642.2 NP_001337571.1 Accepted alive Link to Nucleotide Sequence:NM_001350642.2Link to Protein Sequence:NP_001337571.1Re-query CCDS DB by Nucleotide ID:NM_001350642Re-query CCDS DB by Protein ID:NP_001337571Link to BLAST:NP_001337571.1
Original member Current member NCBI NM_153218.4 NP_694950.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153218.4Link to Protein Sequence:NP_694950.2Re-query CCDS DB by Nucleotide ID:NM_153218Re-query CCDS DB by Protein ID:NP_694950Link to BLAST:NP_694950.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121775.1 430 Q8IV20 430 100% 0 0
NP_001337567.1 430 Q8IV20 430 100% 0 0
NP_001337568.1 430 Q8IV20 430 100% 0 0
NP_001337569.1 430 Q8IV20 430 100% 0 0
NP_001337570.1 430 Q8IV20 430 100% 0 0
NP_001337571.1 430 Q8IV20 430 100% 0 0
NP_694950.2 430 Q8IV20 430 100% 0 0

Chromosomal Locations for CCDS 9391.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 43880986 43881547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43882185 43882363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43883771 43883936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43888757 43888982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43890114 43890273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGCAGAAGCTGTTTTGATTGATCTTTTTGGTTTGAAATTGAACTCTCAAAAAAACTGCCATCAGACAT
TA
CTGAAGACTTTGAATGCTGTCCAATACCACCATGCTGCCAAGGCCAAGTTTCTCTGTATAATGTGTTG
C
AGTAACATCAGCTATGAAAGGGATGGAGAACAAGATAATTGTGAAATAGAAACAAGCAATGGATTATCA
GCT
CTCTTGGAAGAATTTGAGATTGTTAGCTGTCCCAGCATGGCTGCCACTTTGTATACCATTAAACAGA
AA
ATTGATGAAAAAAATCTGAGCAGCATTAAGGTAATTGTACCCAGGCACAGGAAGACATTAATGAAAGC
T
TTTATTGATCAACTCTTCACTGATGTTTACAATTTTGAATTTGAAGATTTGCAAGTGACTTTTAGGGGA
GGG
CTTTTTAAACAGTCCATTGAAATAAACGTAATCACAGCTCAAGAACTAAGAGGAATTCAGAATGAAA
TA
GAAACATTTTTGAGAAGTCTGCCAGCACTGAGAGGAAAATTAACTATTATCACTTCTTCTTTGATCCC
A
GATATTTTCATACATGGATTTACTACAAGAACAGGTGGGATATCTTATATACCAACTCTTAGCTCATTC
AAT
CTCTTCAGTAGTTCCAAACGGAGAGATCCCAAGGTAGTGGTTCAAGAAAATCTGCGTAGGTTGGCGA
AT
GCTGCAGGATTTAATGTGGAGAAATTTTACCGAATAAAGACTCATCATTCCAATGACATCTGGATTAT
G
GGAAGAAAGGAGCCTGACTCTTATGATGGAATAACCACAAATCAGAGAGGAGTCACAATAGCAGCTCTT
GGT
GCAGACTGTATACCGATAGTTTTTGCAGATCCAGTCAAAAAAGCATGTGGGGTTGCTCACGCTGGTT
GG
AAAGGTACTTTGTTGGGTGTTGCTATGGCTACAGTGAATGCTATGATAGCAGAATATGGCTGCAGTTT
G
GAAGACATTGTTGTTGTACTTGGACCTTCAGTAGGACCTTGCTGTTTTACTCTTCCAAGGGAATCAGCA
GAG
GCATTTCATAATCTTCATCCTGCATGTGTACAACTATTTGATTCACCAAATCCCTGTATCGACATCC
GT
AAAGCCACAAGGATTCTTCTAGAACAGGGAGGAATTCTTCCACAGAATATTCAGGACCAGAACCAAGA
T
CTCAACCTCTGTACATCTTGCCATCCTGACAAGTTTTTCTCCCATGTCCGAGATGGCCTTAATTTTGGT
ACA
CAGATTGGCTTCATATCAATTAAAGAATGA


Translation (430 aa):
MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDNCEIETSNGLS
A
LLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFIDQLFTDVYNFEFEDLQVTFRG
G
LFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTIITSSLIP
DIFIHGFTTRTGGISYIPTLSSF
N
LFSSSKRRDPKVVVQENLRRLANAAGFNVEKFYRIK
THHSNDIWIMGRKEPDSYDGITTNQRGVTIAAL
G
ADCIPIVFADPVKKACGVAHA
GWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESA
E
AFHNLHPACVQLFDSPNPCIDIRKAT
RILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG
T
QIGFISIKE




Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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