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Report for CCDS93991.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93991.1 Public Homo sapiens 6 CALHM4 24 110 108 CCDS HistoryNCBI Gene:221301Re-query CCDS DB by CCDS ID:93991.1Re-query CCDS DB by GeneID:221301See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93991.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368596.4 ENSP00000357585.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368596.4Link to Ensembl Protein Viewer:ENSP00000357585.3Re-query CCDS DB by Nucleotide ID:ENST00000368596Re-query CCDS DB by Protein ID:ENSP00000357585
Original member Current member NCBI NM_001366078.2 NP_001353007.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001366078.2Link to Protein Sequence:NP_001353007.1Re-query CCDS DB by Nucleotide ID:NM_001366078Re-query CCDS DB by Protein ID:NP_001353007Link to BLAST:NP_001353007.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001353007.1 314 Q5JW98-1 314 100% 0 0

Chromosomal Locations for CCDS 93991.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116553794 116554351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116557825 116558211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGTGCCCAACTCTCAACAATATTGTGTCTTCTCTGCAGAGAAATGGAATATTTATCAATTCTTTAATTG
CAGCCTTGACTATTGGTGGGCAACAACTCTTCTCCTCTTCTACATTCAGCTGTCCTTGTCAGGTTGGAAA
AAATTTCTATTATGGTTCTGCTTTTCTTGTCATTCCTGCCTTGATCCTTCTCGTTGCTGGCTTTGCTCTG
AGAAGCCAAATGTGGACAATTACCGGTGAATACTGCTGCAGCTGTGCCCCTCCATACAGGAGAATCAGCC
CCCTAGAGTGCAAGCTGGCTTGCCTTAGGTTCTTCAGCATCACTGGGAGGGCAGTTATTGCTCCTTTAAC
TTGGCTGGCGGTGACCCTGCTGACAGGCACGTATTATGAATGTGCAGCAAGTGAATTTGCATCTGTGGAC
CATTACCCAATGTTTGATAATGTCAGTGCCAGCAAACGAGAAGAGATCCTGGCTGGGTTTCCATGTTGCA
GATCAGCTCCTTCTGACGTGATCCTAGTAAGAGATGAAATAGCTCTTCTGCACAGATACCAGTCACAGAT
GCTGGGTTGGATTTTGATCACCTTGGCAACCATTGCTGCCTTAGTCTCCTGCTGTGTGGCAAAGTGCTGC
TCTCCCCTCACCTCTCTGCAACATTGCTACTGGACCAGCCACCTCCAGAATGAGAGAGAACTCTTTGAAC
AAGCAGCAGAGCAGCACTCTCGGCTCCTCATGATGCATCGCATAAAGAAGCTATTTGGCTTCATTCCCGG
GAGTGAAGACGTCAAACACATCCGCATTCCTTCTTGTCAGGACTGGAAAGATATTTCAGTACCCACTCTT
TTATGCATGGGTGATGACTTGCAAGGTCACTATAGCTTCCTTGGAAATAGGGTGGATGAGGATAATGAGG
AAGACAGATCAAGAGGTATTGAATTAAAACCTTGA

Translation (314 aa):
MCPTLNNIVSSLQRNGIFINSLIAALTIGGQQLFSSSTFSCPCQVGKNFYYGSAFLVIPALILLVAGFAL
RSQMWTITGEYCCSCAPPYRRISPLECKLACLRFFSITGRAVIAPLTWLAVTLLTGTYYECAASEFASVD
HYPMFDNVSASKREEILAGFPCCRSAPSDVILVRDEIALLHRYQSQMLGWILITLATIAALVSCCVAKCC
SPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMHRIKKLFGFIPGSEDVKHIRIPSCQDWKDISVPTL
LCMGDDLQGHYSFLGNRVDEDNEEDRSRGIELKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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