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Report for CCDS94087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94087.1 Public Homo sapiens 7 TARP 24 110 108 CCDS HistoryNCBI Gene:445347Re-query CCDS DB by CCDS ID:94087.1Re-query CCDS DB by GeneID:445347See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 94087.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000698248.1 ENSP00000513628.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698248.1Link to Ensembl Protein Viewer:ENSP00000513628.1Re-query CCDS DB by Nucleotide ID:ENST00000698248Re-query CCDS DB by Protein ID:ENSP00000513628
Original member Current member NCBI NM_001003799.2 NP_001003799.1 Accepted alive Link to Nucleotide Sequence:NM_001003799.2Link to Protein Sequence:NP_001003799.1Re-query CCDS DB by Nucleotide ID:NM_001003799Re-query CCDS DB by Protein ID:NP_001003799Link to BLAST:NP_001003799.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003799.1 58 A2JGV3 58 100% 0 0

Chromosomal Locations for CCDS 94087.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 38265490 38265666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (177 nt):
ATGCAGATGTTTCCCCCAAGCCCACTATTTTTCTTCCTTCAATTGCTGAAACAAAGCTCCAGAAGGCTGG
AACATACCTTTGTCTTCTTGAGAAATTTTTCCCTGATGTTATTAAGATACATTGGCAAGAAAAGAAGAGC
AACACGATTCTGGGATCCCAGGAGGGGAACACCATGA

Translation (58 aa):
MQMFPPSPLFFFLQLLKQSSRRLEHTFVFLRNFSLMLLRYIGKKRRATRFWDPRRGTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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