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Report for CCDS9413.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9413.2 Public Homo sapiens 13 FNDC3A 24 110 108 CCDS HistoryNCBI Gene:22862Re-query CCDS DB by CCDS ID:9413.2Re-query CCDS DB by GeneID:22862See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9413.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398316.7 ENSP00000381362.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398316.7Link to Ensembl Protein Viewer:ENSP00000381362.3Re-query CCDS DB by Nucleotide ID:ENST00000398316Re-query CCDS DB by Protein ID:ENSP00000381362
Original member Current member NCBI NM_014923.5 NP_055738.3 Accepted alive Link to Nucleotide Sequence:NM_014923.5Link to Protein Sequence:NP_055738.3Re-query CCDS DB by Nucleotide ID:NM_014923Re-query CCDS DB by Protein ID:NP_055738Link to BLAST:NP_055738.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055738.3 1142 Q9Y2H6-2 1142 100% 0 0

Chromosomal Locations for CCDS 9413.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49110400 49110406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49114655 49114731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49131137 49131374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49136332 49136601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49138747 49138805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49145778 49145935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49167244 49167303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49168613 49168751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49172043 49172096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49174435 49174559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49175367 49175541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49178568 49178654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49185964 49186102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49187122 49187190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49188515 49188633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49191015 49191120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49191209 49191384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49196877 49196990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49197725 49197874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49197982 49198265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49198362 49198574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49201800 49201966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49203157 49203284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49207081 49207395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3429 nt):
ATGAGTGGTCCTGCTCAGGTTCCAATGATGTCCCCAAATGGTTCTGTGCCTCCTATCTATGTGCCTCCTG
GATATGCCCCACAGGTTATTGAAGACAATGGTGTTCGAAGAGTTGTCGTGGTCCCTCAGGCACCAGAGTT
TCACCCTGGTAGTCACACAGTTCTCCACCGTTCTCCACATCCTCCTCTACCTGGTTTCATTCCTGTCCCA
ACTATGATGCCGCCTCCACCACGTCATATGTACTCACCCGTGACTGGAGCTGGAGACATGACAACACAGT
ATATGCCACAGTATCAGTCTTCACAAGTCTATGGAGATGTAGATGCTCACTCTACACATGGAAGGTCCAA
CTTTAGAGATGAACGATCTAGTAAAACATATGAACGTTTGCAGAAAAAATTGAAGGATCGCCAAGGAACA
CAGAAAGATAAAATGAGCAGTCCACCATCATCACCCCAGAAATGCCCTTCTCCCATTAATGAACATAATG
GACTTATAAAAGGACAAATTGCTGGTGGTATAAACACAGGATCAGCAAAAATCAAGTCTGGGAAGGGGAA
AGGTGGTACACAAGTTGATACAGAAATTGAAGAAAAAGATGAAGAAACTAAAGCATTTGAAGCACTTCTT
TCCAACATTGTCAAACCAGTGGCCTCCGACATCCAGGCAAGGACAGTAGTACTTACCTGGTCACCACCTT
CCAGCCTCATTAATGGTGAAACAGATGAAAGTAGTGTACCAGAGCTCTATGGTTATGAAGTTCTGATCTC
AAGTACTGGAAAAGATGGGAAATACAAAAGTGTATATGTAGGAGAAGAAACAAATATCACTTTAAATGAT
CTCAAGCCAGCCATGGATTACCATGCAAAAGTCCAGGCAGAATATAATTCTATAAAGGGAACTCCTTCAG
AGGCTGAAATCTTTACCACCTTGAGCTGTGAACCTGATATACCTAATCCACCAAGGATAGCCAATCGGAC
CAAAAATTCACTCACTTTGCAATGGAAGGCACCTAGTGACAATGGTTCTAAAATCCAAAACTTTGTATTA
GAATGGGATGAAGGAAAAGGAAATGGAGAATTTTGTCAGTGTTACATGGGCTCACAGAAACAATTTAAAA
TTACTAAACTTTCACCAGCAATGGGCTGTAAATTCAGACTATCGGCCAGAAATGACTATGGTACAAGTGG
TTTTAGTGAAGAAGTCTTATATTACACCTCAGGCTGTGCTCCTTCTATGCCAGCAAGTCCTGTATTAACC
AAGGCTGGAATTACTTGGTTATCCTTACAATGGAGTAAGCCCTCAGGAACACCATCAGATGAAGGAATTT
CTTACATTTTAGAGATGGAGGAAGAAACTTCAGGATATGGTTTTAAGCCTAAATATGATGGAGAAGATCT
TGCTTACACAGTGAAAAATCTCAGACGTAGTACTAAGTATAAATTTAAGGTTATTGCTTACAACTCAGAA
GGTAAAAGTAATCCAAGTGAAGTAGTAGAATTTACTACTTGCCCTGATAAACCAGGCATACCTGTAAAGC
CTTCAGTGAAAGGAAAGATACATTCACACAGTTTTAAAATAACCTGGGATCCACCAAAAGACAATGGCGG
AGCAACCATCAATAAATATGTAGTGGAGATGGCAGAAGGTTCTAACGGAAACAAATGGGAAATGATATAC
AGTGGTGCTACCAGGGAACATCTTTGTGATCGACTGAATCCAGGCTGTTTCTATCGTTTACGAGTTTACT
GCATCAGTGATGGAGGACAGAGTGCGGTCTCTGAATCTTTACTTGTGCAGACTCCAGCTGTGCCTCCTGG
CCCATGCCTCCCTCCCAGATTACAGGGTAGACCCAAAGCAAAAGAAATACAGTTACGATGGGGACCCCCT
CTGGTTGATGGTGGATCACCCATTTCCTGTTACAGTGTGGAAATGTCTCCTATAGAAAAAGATGAACCTA
GAGAAGTTTACCAAGGTTCTGAAGTAGAATGTACAGTGAGCAGCCTTCTTCCTGGAAAGACATACAGCTT
CAGACTACGTGCAGCTAACAAAATGGGGTTTGGACCATTTTCAGAAAAATGTGATATTACTACAGCCCCT
GGGCCACCAGATCAGTGCAAGCCCCCTCAAGTGACATGTAGATCTGCAACTTGTGCACAAGTGAATTGGG
AGGTTCCTTTGAGTAATGGAACAGATGTCACTGAATATCGACTGGAGTGGGGAGGAGTTGAAGGAAGTAT
GCAGATATGTTACTGTGGGCCTGGTCTCAGTTATGAAATAAAAGGACTTTCACCAGCAACTACCTATTAT
TGCAGGGTCCAGGCTCTGAGTGTTGTGGGTGCAGGCCCTTTCAGTGAAGTAGTAGCCTGTGTGACTCCAC
CATCAGTTCCTGGCATTGTGACCTGTCTTCAAGAAATAAGCGATGATGAGATAGAAAATCCCCATTATTC
ACCTTCTACATGCCTTGCAATAAGCTGGGAAAAGCCTTGTGATCATGGTTCGGAAATCCTTGCCTACAGC
ATAGACTTTGGAGATAAACAATCCCTAACAGTGGGAAAGGTTACAAGCTATATTATCAACAATTTGCAAC
CAGATACAACATACAGAATACGAATTCAAGCCTTGAATAGCCTTGGAGCTGGTCCTTTCAGCCATATGAT
AAAATTAAAAACTAAGCCTCTCCCTCCTGATCCACCTCGTCTGGAATGTGTTGCCTTTAGCCACCAGAAC
CTTAAGCTGAAATGGGGAGAAGGAACTCCAAAGACATTGTCAACCGATTCTATTCAGTACCACCTTCAGA
TGGAGGATAAGAATGGACGGTTTGTATCCCTATACAGAGGACCATGTCATACATACAAAGTACAAAGACT
TAATGAGTCAACATCCTATAAATTCTGTATTCAAGCTTGTAATGAAGCTGGGGAAGGTCCCCTCTCCCAA
GAATATATTTTCACTACTCCAAAATCTGTCCCAGCTGCCTTGAAAGCCCCCAAAATAGAGAAAGTAAATG
ATCACATTTGTGAAATTACATGGGAGTGTTTACAGCCAATGAAAGGTGATCCAGTTATTTACAGTCTTCA
AGTTATGTTGGGAAAAGATTCAGAATTCAAACAGATTTACAAGGGTCCCGACTCTTCCTTCCGGTATTCC
AGCCTTCAGCTGAACTGTGAATATCGCTTCCGTGTATGTGCCATTCGCCAGTGCCAAGACTCTCTGGGAC
ACCAGGACCTCGTAGGTCCCTACAGCACCACAGTGCTCTTCATCTCTCAGAGGACTGAACCACCAGCCAG
CACCAACAGAGACACTGTGGAAAGCACAAGGACCCGACGGGCACTGAGTGACGAGCAGTGTGCTGCCGTC
ATCCTTGTGCTGTTTGCTTTCTTTTCCATTTTGATTGCCTTTATCATTCAGTACTTTGTAATCAAGTGA

Translation (1142 aa):
MSGPAQVPMMSPNGSVPPIYVPPGYAPQVIEDNGVRRVVVVPQAPEFHPGSHTVLHRSPHPPLPGFIPVP
TMMPPPPRHMYSPVTGAGDMTTQYMPQYQSSQVYGDVDAHSTHGRSNFRDERSSKTYERLQKKLKDRQGT
QKDKMSSPPSSPQKCPSPINEHNGLIKGQIAGGINTGSAKIKSGKGKGGTQVDTEIEEKDEETKAFEALL
SNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLND
LKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVL
EWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCAPSMPASPVLT
KAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSE
GKSNPSEVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIY
SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPP
LVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAP
GPPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYEIKGLSPATTYY
CRVQALSVVGAGPFSEVVACVTPPSVPGIVTCLQEISDDEIENPHYSPSTCLAISWEKPCDHGSEILAYS
IDFGDKQSLTVGKVTSYIINNLQPDTTYRIRIQALNSLGAGPFSHMIKLKTKPLPPDPPRLECVAFSHQN
LKLKWGEGTPKTLSTDSIQYHLQMEDKNGRFVSLYRGPCHTYKVQRLNESTSYKFCIQACNEAGEGPLSQ
EYIFTTPKSVPAALKAPKIEKVNDHICEITWECLQPMKGDPVIYSLQVMLGKDSEFKQIYKGPDSSFRYS
SLQLNCEYRFRVCAIRQCQDSLGHQDLVGPYSTTVLFISQRTEPPASTNRDTVESTRTRRALSDEQCAAV
ILVLFAFFSILIAFIIQYFVIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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