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Report for CCDS9427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9427.1 Public Homo sapiens 13 FAM124A 24 110 108 CCDS HistoryNCBI Gene:220108Re-query CCDS DB by CCDS ID:9427.1Re-query CCDS DB by GeneID:220108See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9427.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280057.6 ENSP00000280057.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000280057.6Link to Ensembl Protein Viewer:ENSP00000280057.6Re-query CCDS DB by Nucleotide ID:ENST00000280057Re-query CCDS DB by Protein ID:ENSP00000280057
Original member Current member NCBI NM_145019.4 NP_659456.3 Accepted alive Link to Nucleotide Sequence:NM_145019.4Link to Protein Sequence:NP_659456.3Re-query CCDS DB by Nucleotide ID:NM_145019Re-query CCDS DB by Protein ID:NP_659456Link to BLAST:NP_659456.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659456.3 582 Q86V42-2 582 100% 0 0

Chromosomal Locations for CCDS 9427.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 51222502 51222569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51231348 51231379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51245312 51245419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51251468 51252201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51280450 51281256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGGACCCAAAGGCGGGCGGCGGCGGCGAGGAGGACGACTGCGTGGACTCGGGCGCCGAGACCGGAGGGT
CCGACTACAGCCACCTGTCCTCCACGAGCAATGGATTCTCCACCTGGCGGATGCCATGTTGCCTGTTCCT
TTACTGTACACACGGTGACAAAGAAAAGGGAAGATGGAGCCTCCAGGTTGAACATACCTGGCCCTCAGGT
GAGCTTTCCGTTGAAGAGGCGCAGGACCCTTTCCTGGTCAGCATCCACATAATCGCAGACCCAGGGGAGT
CCCAGCCCCTGCAGGAGGCCATCGACAACGTCCTGGCGTGGATCCACCCCGACCTCCCGCTGTTCCGGGT
GTCCGAGAGGCGGGCGTCCCGGCGGCGGCGGAAGCCCCCCAAGGGCGCTCAGCCAGCGCTGGCTGTGGTG
CTGTTCCTGCAGGAGGAGTACGGCGAAGAGCAGATCCTGCAGCTGCACCGCACACTGCAGCAGCCGCCCT
GGCGCCACCACCACACCGAGCAGGTGCACGGCCGGTTCCTGCCCTACCTGCCCTGCAGCCAGGACTTCTT
CACGCTGGCCCCTGGGACGCCGCTTTGGGCCATCCGGCCCGTGCACTACGGCAAGGAAATCGTGCGCTTC
ACCGTCTACTGTCGCTACGACAACTATGCTGACAGCCTCAGGTTCTACCAGCTGATTCTCCGGAGGAGCC
CCAGCCAGAAGAAAGCGGACTTCTGCATCTTCCCTATTTTTTCCAACCTGGATGTGGACATCCAGTTCTC
CCTGAAAAGACTGCCCTGTGACCAGTGCCCGGTGCCCACCGACTCCTCCGTGCTGGAGTTCCGAGTGAGG
GACATAGGCGAGCTCGTGCCTCTCCTGCCCAACCCTTGCAGCCCCATCAGCGAGGGGCGCTGGCAGACGG
AGGACCATGATGGGAACAAGATCCTCCTACAGGCACAAAGGGTGCATAAGAAGTTTCCTAAACCTGGCAG
AGTACATCATGCCTCCGAGAAGAAACGTCATTCCACTCCTTTGCCGAGCACTGCTGTACCAAGCCATACA
CCTGGCAGCAGCCAGCAGTCCCCGCTCAACAGTCCTCACCCGGGGCCCATCCGGACAGGCCTGCCTCCTG
GGCACCAGCAGGAATTTGCCGGACGAGCCAACAGCACCCCCAACCCTCCCTGGTCTTTCCAGAGAAGCAA
GTCCTTGTTTTGTTTGCCCACGGGAGGCCCCTCCCTGGCCTCCTCAGCTGAACCACAGTGGTTTTCAAAC
ACAGGTGCCCCAGGGCACAGGGCATCAGAGTGGAGGCATGGCCACCTCCTCTCCATCGATGACCTAGAGG
GGGCCCAGGAGACAGACGTGGACACAGGCCTGCGGCTGTCCTCATCGGACCTGTCTGTGGTCTCTGCATA
TTCTGCACCCAGTAGGTTCTGCAGCACAGTGGAGACACCCCTCCCCTCCGAAAGATGCAGCAGCCACTGG
GCAGCTCACAAGGATTCCAGGGAGGGACCACTGCCCACTGTCAGCAGGGTGACCACAGAGGCCTCCTGGG
CTTCCCTCCCTTTCTTCACCAAAAGGTCTTCCAGCTCCTCAGCGACAGCTCGTGCTGCTCCCCCAGCTCC
CAGCACCTCCACCCTCACAGACTCCTCCCCACAGCTCCCATGCGATACCCCCAAAGTCAAGCAGACTGAT
GGAGACATGCCACCACCCCCAGGGTCGGCTGGCCCCGGGGATAACGACATGGAGGAATTCTACATCTGA

Translation (582 aa):
MDPKAGGGGEEDDCVDSGAETGGSDYSHLSSTSNGFSTWRMPCCLFLYCTHGDKEKGRWSLQVEHTWPSG
ELSVEEAQDPFLVSIHIIADPGESQPLQEAIDNVLAWIHPDLPLFRVSERRASRRRRKPPKGAQPALAVV
LFLQEEYGEEQILQLHRTLQQPPWRHHHTEQVHGRFLPYLPCSQDFFTLAPGTPLWAIRPVHYGKEIVRF
TVYCRYDNYADSLRFYQLILRRSPSQKKADFCIFPIFSNLDVDIQFSLKRLPCDQCPVPTDSSVLEFRVR
DIGELVPLLPNPCSPISEGRWQTEDHDGNKILLQAQRVHKKFPKPGRVHHASEKKRHSTPLPSTAVPSHT
PGSSQQSPLNSPHPGPIRTGLPPGHQQEFAGRANSTPNPPWSFQRSKSLFCLPTGGPSLASSAEPQWFSN
TGAPGHRASEWRHGHLLSIDDLEGAQETDVDTGLRLSSSDLSVVSAYSAPSRFCSTVETPLPSERCSSHW
AAHKDSREGPLPTVSRVTTEASWASLPFFTKRSSSSSATARAAPPAPSTSTLTDSSPQLPCDTPKVKQTD
GDMPPPPGSAGPGDNDMEEFYI


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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