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Report for CCDS9436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9436.1 Public Homo sapiens 13 SUGT1 24 110 108 CCDS HistoryNCBI Gene:10910Re-query CCDS DB by CCDS ID:9436.1Re-query CCDS DB by GeneID:10910See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9436.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310528.9 ENSP00000308067.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310528.9Link to Ensembl Protein Viewer:ENSP00000308067.7Re-query CCDS DB by Nucleotide ID:ENST00000310528Re-query CCDS DB by Protein ID:ENSP00000308067
Original member Current member NCBI NM_006704.5 NP_006695.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006704.5Link to Protein Sequence:NP_006695.1Re-query CCDS DB by Nucleotide ID:NM_006704Re-query CCDS DB by Protein ID:NP_006695Link to BLAST:NP_006695.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006695.1 333 Q9Y2Z0-2 333 100% 0 0

Chromosomal Locations for CCDS 9436.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 52652921 52652958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52653046 52653103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52657532 52657622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52658399 52658468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52659179 52659249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52662649 52662702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52663096 52663112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52664035 52664057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52665637 52665733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52666812 52666919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52676230 52676320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52679974 52680155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52687734 52687835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGCGGCGGCTGCAGCAGGAACTGCAACATCCCAGAGGTTTTTCCAGAGCTTCTCGGATGCCCTAATCG
ACGAGGACCCCCAGGCGGCGTTAGAGGAGCTGACTAAGGCTTTGGAACAGAAACCAGATGATGCACAGTA
TTATTGTCAAAGAGCTTATTGTCACATTCTTCTTGGGAATTACTGTGTTGCTGTTGCTGATGCAAAGAAG
TCTCTAGAACTCAATCCAAATAATTCCACTGCTATGCTGAGAAAAGGAATATGTGAATACCATGAAAAAA
ACTATGCTGCTGCCCTAGAAACTTTTACAGAAGGACAAAAATTAGATAGTGCAGATGCTAATTTCAGTGT
CTGGATTAAAAGGTGTCAAGAAGCTCAGAATGGCTCAGAATCTGAGGTGTGGACTCATCAGTCAAAAATC
AAGTATGACTGGTATCAAACAGAATCTCAAGTAGTCATTACACTTATGATCAAGAATGTTCAGAAGAATG
ATGTAAATGTGGAATTTTCAGAAAAAGAGTTGTCTGCTTTGGTTAAACTTCCTTCTGGAGAGGATTACAA
TTTGAAACTGGAACTTCTTCATCCTATAATACCAGAACAGAGCACGTTTAAAGTACTTTCAACAAAGATT
GAAATTAAACTGAAAAAGCCAGAGGCTGTGAGATGGGAAAAGCTAGAGGGGCAAGGAGATGTGCCTACGC
CAAAACAATTCGTAGCAGATGTAAAGAACCTATATCCATCATCATCTCCTTATACAAGAAATTGGGATAA
ATTGGTTGGTGAGATCAAAGAAGAAGAAAAGAATGAAAAGTTGGAGGGAGATGCAGCTTTAAACAGATTA
TTTCAGCAGATCTATTCAGATGGTTCTGATGAAGTGAAACGTGCCATGAACAAATCCTTTATGGAGTCGG
GTGGTACAGTTTTGAGTACCAACTGGTCTGATGTAGGTAAAAGGAAAGTTGAAATCAATCCTCCTGATGA
TATGGAATGGAAAAAGTACTAA

Translation (333 aa):
MAAAAAGTATSQRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKK
SLELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADANFSVWIKRCQEAQNGSESEVWTHQSKI
KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKI
EIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEEKNEKLEGDAALNRL
FQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEWKKY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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