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Report for CCDS9441.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
9441.1 |
Public |
Homo sapiens |
13 |
TDRD3 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:81550](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:9441.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:81550](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 9441.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000196169.7 |
ENSP00000196169.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000196169.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000196169.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000196169](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000196169](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000377894.6 |
ENSP00000367126.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000377894.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000367126.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000377894](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000367126](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000648252.1 |
ENSP00000498191.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000648252.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000498191.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000648252](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000498191](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001146071.1 |
NP_001139543.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001146071.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001139543.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001146071](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001139543](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001139543.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_030794.2 |
NP_110421.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_030794.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_110421.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_030794](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_110421](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_110421.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 9441.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1956 nt): ATGCTGCGATTACAGATGACTGATGGTCATATAAGTTGCACAGCAGTAGAATTTAGTTATATGTCAAAAA TAAGCCTGAACACACCACCTGGAACTAAAGTTAAGCTCTCAGGCATTGTTGACATAAAAAATGGATTCCT GCTCTTGAATGACTCTAACACCACAGTTCTTGGTGGTGAAGTGGAACACCTTATTGAGAAATGGGAGTTA CAGAGAAGCTTATCAAAACACAATAGAAGCAATATTGGAACTGAAGGTGGACCACCGCCTTTTGTGCCTT TTGGACAGAAGTGTGTATCTCATGTCCAAGTGGATAGCAGAGAACTTGATCGAAGAAAAACATTGCAAGT TACAATGCCTGTCAAACCTACAAATGATAATGATGAATTTGAAAAGCAAAGGACGGCTGCTATTGCTGAA GTTGCAAAGAGCAAGGAAACCAAGACATTTGGAGGAGGTGGTGGTGGTGCTAGAAGTAATCTCAATATGA ATGCTGCTGGTAACCGAAATAGGGAAGTTTTACAGAAAGAAAAGTCAACCAAATCAGAGGGAAAACATGA AGGTGTCTATAGAGAACTGGTTGATGAGAAAGCTCTGAAGCACATAACGGAAATGGGCTTCAGTAAGGAA GCATCGAGGCAAGCTCTTATGGATAATGGCAACAACTTAGAAGCAGCACTGAACGTACTTCTTACAAGCA ATAAACAGAAACCTGTTATGGGTCCTCCTCTGAGAGGTAGAGGAAAAGGCAGGGGGCGAATAAGATCTGA AGATGAAGAGGACCTGGGAAATGCAAGGCCATCAGCACCAAGCACATTATTTGATTTCTTGGAATCTAAA ATGGGAACTTTGAATGTGGAAGAACCTAAATCACAGCCACAGCAGCTTCATCAGGGACAATACAGATCAT CAAATACTGAGCAAAATGGAGTAAAAGATAATAATCATCTGAGACATCCTCCTCGAAATGATACCAGGCA GCCAAGAAATGAAAAACCGCCTCGTTTTCAAAGAGACTCCCAAAATTCAAAGTCAGTTTTAGAAGGCAGT GGATTACCTAGAAATAGAGGTTCTGAAAGACCAAGTACTTCTTCAGTATCTGAAGTATGGGCTGAAGACA GAATCAAATGTGATAGACCGTATTCTAGATATGACAGAACTAAAGATACTTCATATCCTTTAGGTTCTCA GCATAGTGATGGTGCTTTTAAAAAAAGAGATAACTCTATGCAAAGCAGATCAGGAAAAGGTCCCTCCTTT GCAGAGGCAAAAGAAAATCCACTTCCTCAAGGATCTGTAGATTATAATAATCAAAAACGTGGAAAAAGAG AAAGCCAAACATCTATTCCTGATTATTTTTATGACAGGAAATCACAAACAATAAATAATGAAGCTTTCAG TGGTATAAAAATTGAAAAACATTTTAATGTAAATACTGATTATCAGAATCCAGTTCGAAGTAATAGTTTC ATTGGTGTTCCAAATGGAGAAGTAGAAATGCCACTGAAAGGAAGACGAATAGGACCTATTAAGCCAGCAG GACCTGTCACAGCTGTACCCTGTGATGATAAAATATTTTACAATAGTGGGCCCAAACGAAGATCTGGGCC AATTAAGCCAGAAAAAATACTAGAATCATCTATTCCTATGGAGTATGCAAAAATGTGGAAACCTGGAGAT GAATGTTTTGCACTTTATTGGGAAGACAACAAGTTTTACCGGGCAGAAGTTGAAGCCCTCCATTCTTCGG GTATGACAGCAGTTGTTAAATTCATTGACTACGGAAACTATGAAGAGGTGCTACTGAGCAATATCAAGCC CATTCAAACAGAGGCATGGGAGGAAGAAGGCACCTACGATCAAACTCTGGAGTTCCGTAGGGGAGGTGAT GGCCAGCCAAGACGATCCACTCGGCCAACCCAACAGTTTTACCAACCACCCCGGGCTCGGAACTAA
Translation (651 aa): MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGEVEHLIEKWEL QRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMPVKPTNDNDEFEKQRTAAIAE VAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHITEMGFSKE ASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESK MGTLNVEEPKSQPQQLHQGQYRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGS GLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSF AEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTDYQNPVRSNSF IGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKPEKILESSIPMEYAKMWKPGD ECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWEEEGTYDQTLEFRRGGD GQPRRSTRPTQQFYQPPRARN
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