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Report for CCDS94459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94459.1 Public Homo sapiens 9 SHOC1 24 110 108 CCDS HistoryNCBI Gene:158401Re-query CCDS DB by CCDS ID:94459.1Re-query CCDS DB by GeneID:158401See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94459.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394777.8 ENSP00000378257.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394777.8Link to Ensembl Protein Viewer:ENSP00000378257.4Re-query CCDS DB by Nucleotide ID:ENST00000394777Re-query CCDS DB by Protein ID:ENSP00000378257
Original member Current member NCBI NM_001378212.1 NP_001365141.1 Accepted alive Link to Nucleotide Sequence:NM_001378212.1Link to Protein Sequence:NP_001365141.1Re-query CCDS DB by Nucleotide ID:NM_001378212Re-query CCDS DB by Protein ID:NP_001365141Link to BLAST:NP_001365141.1

Chromosomal Locations for CCDS 94459.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 111686770 111686870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111691551 111692511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111693799 111693948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111694231 111694362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111699954 111700047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111702105 111702226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111703881 111703992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111705247 111705364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111706568 111706746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111707855 111707924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111713100 111713172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111714445 111714623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111722409 111722585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111723792 111723911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111727633 111728049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111738280 111738522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111741476 111741570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111746234 111746342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111748092 111748199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111756325 111756478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111758084 111758195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111758695 111758848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111759156 111759288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4113 nt):
ATGTCAGAGACTCTGGGGGATGAATTGGAGATATTAAGAGGTAAAATGATGCAGAGAAGACCAAGGTCAG
CAGAAGTCAAATACTTCTATTTCTTTAAAATTTTGCTTAGGCTACGCCTGGCTATTTTGAAGTATTTATT
TATTGATGATAAAGGAATACTTTTTGTAAGTAGTAGAAAACACCTACCAACTTTGCCTACTCTCTTGAGT
AGACTAAAACTGTTTTTGGTAAAGGATCCTCTTTTAGATTTCAAAGGACAGATCTTCACAGAAGCTAATT
TTTCCAGGGAATGTTTCTCTCTTCAAGAAACTTTGGAAGCTTTTGTGAAAGAAGATTTTTGTATGGATAA
AGTGAACTTTTGTCAAGAGAAACTAGAAGATACAATATGTTTAAATGAGCCGTCAAGTTTTCTTATTGAG
TATGAATTCTTAATACCTCCAAGCCTCAAACCAGAAATTGATATTCCATCACTCTCAGAACTGAAGGAGT
TATTAAACCCAGTGCCAGAAATAATAAACTATGTAGATGAAAAGGAAAAGCTTTTTGAAAGAGATCTTAC
TAACAAGCATGGAATTGAGGATATCGGGGATATAAAATTCAGCTCCACAGAGATTTTGACCATTCAAAGC
CAGAGTGAACCAGAAGAGTGCAGTAAACCAGGAGAGTTAGAAATGCCACTAACTCCTCTATTCCTAACAT
GCCAACATTCTTCAGTGAATTCATTACGTACAGAACTTCAGACATTTCCATTATCTCCGGTTTGTAAAAT
TAATTTGCTTACTGCTGAAGAATCAGCTAATGAATACTACATGATGTGGCAATTAGAAAGATGTAGAAGC
CCTTTGAACCCATTTTTGCTTACAGTGCCAAGAATTCAAGAGCCCCACAGCCAATATTCAGTTACAGATT
TGAAAAAGATATTTTCTGTTAAAGAAGAAAGCCTTGTGATTAATCTGGAAAAGGCAGAGTGGTGGAAACA
AGCAGGACTAAATCTGAAAATGATGGAAACATTGGAACATCTGAATACATATTTATGTCATGATAATTTG
TCTTCTAATGACACTAAAATTGAGATATTTTTGCCTACGAAAGTGCTTCAATTAGAATCATGTCTAGAAC
ATAAAAGTCATTCTTCACCTATTGCACTTATTGATGAAAAATCTACAAATGCTCATTTATCACTTCCACA
AAAGAGTCCATCTCTGGCAAAAGAAGTACCAGATCTATGTTTTTCTGATGACTATTTCTCTGATAAAGGA
GCAGCAAAAGAAGAAAAACCAAAGAATGACCAAGAACCAGTAAACAGAATAATCCAAAAGAAAGAAAATA
ACGATCACTTTGAACTTGACTGCACAGGACCATCTATTAAATCACCTTCCTCTTCAATAATTAAAAAAGC
ATCTTTTGAACATGGCAAAAAACAAGAGAATGATTTGGACCTTTTGAGCGACTTTATTATGCTGCGAAAT
AAATATAAGACTTGCACCTCAAAGACTGAAGTCACAAACAGTGATGAAAAACATGATAAAGAAGCATGTT
CTTTGACACTTCAAGAAGAAAGTCCTATTGTTCATATTAATAAAACCCTGGAGGAAATAAATCAGGAAAG
GGGAACAGATAGTGTCATTGAAATTCAAGCGTCAGATAGCCAGTGCCAAGCATTTTGCCTCCTCGAAGCA
GCAGCTTCTCCTATCTTAAAAAACCTTGTATCCTTGTGTACCCTCCCTACTGCTAATTGGAAATTTGCCA
CTGTTATTTTTGACCAAACAAGGTTTCTCTTAAAGGAACAAGAAAAAGTAGTAAGTGATGCTGTTCGCCA
AGGATATTTGTCGAAGGCAAAAGATATCTACAACAGCATTTTAGGCCCCTATTTGGGTGACATTTGGAGA
CAGCTGGAGATTGTACAGTTTATTAGGGGGAAAAAGCCTGAAACCAACTACAAGATACAAGAATTGCAAT
GTCAGATACTAAGTTGGATGCAAAGTCAACAGCAAATTAAGGTACTGATTATAATAAGAATGGACTCAGA
CGGTGAAAAACATTTTCTCATTAAAATTCTTAACAAAATAGAAGGTTTAACACTGACTGTCCTTCATTCA
AATGAAAGAAAAGATTTTCTGGAATCTGAAGGTGTTTTAAGGGGTACAAGTTCCTGTGTAGTTGTACATA
ATCAATATATTGGAGCAGATTTCCCCTGGAGTAATTTCTCATTTGTGGTGGAATACAATTATGTGGAAGA
CTCTTGTTGGACTAAACACTGCAAAGAGTTGAATATTCCTTACATGGCCTTTAAAGTGATTCTTCCAGAC
ACAGTTTTAGAAAGAAGCACCTTGCTGGATAGATTTGGAGGTTTTCTTTTGGAAATTCAGATTCCATATG
TGTTTTTTGCATCTGAAGGACTTCTTAATACTCCAGACATACTTCAGCTGCTAGAATCCAACTATAACAT
CTCACTAGTAGAGAGAGGCTGCAGTGAGTCATTGAAACTCTTTGGAAGTTCAGAGTGTTATGTAGTGGTG
ACAATTGATGAACACACTGCCATAATTTTGCAGGATCTAGAAGAATTGAATTATGAGAAGGCATCAGACA
ATATCATTATGAGGCTGATGGCATTATCATTACAGTACAGATATTGTTGGATAATTTTATATACCAAAGA
AACATTAAATTCAGAGTATCTGCTTACAGAAAAGACACTTCATCACCTAGCACTGATTTATGCAGCTTTG
GTTTCATTTGGGCTAAACTCTGAAGAACTGGATGTAAAGCTTATAATTGCCCCAGGAGTAGAAGCAACTG
CCTTGATAATTCGACAAATTGCTGACCACAGTTTAATGACCTCAAAGAGAGATCCTCATGAATGGTTGGA
TAAATCCTGGCTTAAAGTTTCACCATCTGAGGAAGAAATGTACTTACTTGATTTTCCATGTATTAACCCA
TTGGTGGCTCAGCTCATGCTAAATAAAGGACCTTCACTGCATTGGATATTATTAGCAACTCTGTGTCAAC
TTCAGGAACTCCTACCTGAAGTCCCAGAAAAAGTGTTAAAGCATTTTTGTAGCATCACTTCCCTATTCAA
GATTGGTTCTTCTTCCATAACAAAATCACCGCAAATTTCGTCACCTCAGGAAAATAGGAATCAGATTAGT
ACCTTGTCTTCTCAAAGTTCAGCTTCTGATTTAGACTCTGTCATTCAAGAACATAATGAATATTATCAGT
ATTTAGGATTAGGAGAGACAGTGCAGGAAGACAAAACCACCATTTTGAATGACAACTCTTCCATTATGGA
ACTAAAAGAAATCTCAAGTTTTTTACCACCTGTGACTTCATACAATCAGACCAGCTACTGGAAAGACTCC
AGCTGTAAATCTAATATAGGGCAGAATACTCCTTTTCTAATTAATATAGAATCAAGGAGACCGGCTTATA
ACTCCTTTCTAAACCACAGTGATTCAGAGTCAGATGTCTTTTCTTTGGGTCTAACACAAATGAACTGTGA
AACTATAAAATCACCAACTGACACTCAGAAGAGAGTGTCAGTTGTCCCCCGTTTTATAAATTCTCAGAAA
AGGAGAACACATGAAGCAAAAGGTTTCATAAATAAAGATGTATCGGACCCTATCTTTTCACTAGAGGGCA
CTCAATCTCCTCTTCATTGGAACTTTAAGAAAAATATATGGGAACAAGAGAATCACCCGTTCAACTTACA
ATATGGTGCACAGCAGACTGCATGTAACAAATTGTACTCTCAGAAAGGTAATTTATTCACTGATCAGCAA
AAATGTCTATCAGATGAGTCTGAAGGCCTCACATGTGAAAGTTCAAAAGATGAGACTTTCTGGAGAGAAT
TACCATCTGTCCCCAGTTTGGATTTATTTCGTGCTTCTGATTCTAATGCAAATCAAAAAGAATTCAACAG
CCTTTATTTCTACCAAAGAGCTGGAAAAAGTTTAGGACAGAAAAGGCACCATGAATCTTCATTTAACTCA
GGAGACAAGGAATCATTAACAGGTTTTATGTGCTCACAACTACCACAATTCAAAAAACGACGTCTAGCAT
ATGAAAAAGTCCCTGGTAGAGTTGATGGGCAGACTCGGCTGAGGTTTTTTTGA

Translation (1370 aa):
MSETLGDELEILRGKMMQRRPRSAEVKYFYFFKILLRLRLAILKYLFIDDKGILFVSSRKHLPTLPTLLS
RLKLFLVKDPLLDFKGQIFTEANFSRECFSLQETLEAFVKEDFCMDKVNFCQEKLEDTICLNEPSSFLIE
YEFLIPPSLKPEIDIPSLSELKELLNPVPEIINYVDEKEKLFERDLTNKHGIEDIGDIKFSSTEILTIQS
QSEPEECSKPGELEMPLTPLFLTCQHSSVNSLRTELQTFPLSPVCKINLLTAEESANEYYMMWQLERCRS
PLNPFLLTVPRIQEPHSQYSVTDLKKIFSVKEESLVINLEKAEWWKQAGLNLKMMETLEHLNTYLCHDNL
SSNDTKIEIFLPTKVLQLESCLEHKSHSSPIALIDEKSTNAHLSLPQKSPSLAKEVPDLCFSDDYFSDKG
AAKEEKPKNDQEPVNRIIQKKENNDHFELDCTGPSIKSPSSSIIKKASFEHGKKQENDLDLLSDFIMLRN
KYKTCTSKTEVTNSDEKHDKEACSLTLQEESPIVHINKTLEEINQERGTDSVIEIQASDSQCQAFCLLEA
AASPILKNLVSLCTLPTANWKFATVIFDQTRFLLKEQEKVVSDAVRQGYLSKAKDIYNSILGPYLGDIWR
QLEIVQFIRGKKPETNYKIQELQCQILSWMQSQQQIKVLIIIRMDSDGEKHFLIKILNKIEGLTLTVLHS
NERKDFLESEGVLRGTSSCVVVHNQYIGADFPWSNFSFVVEYNYVEDSCWTKHCKELNIPYMAFKVILPD
TVLERSTLLDRFGGFLLEIQIPYVFFASEGLLNTPDILQLLESNYNISLVERGCSESLKLFGSSECYVVV
TIDEHTAIILQDLEELNYEKASDNIIMRLMALSLQYRYCWIILYTKETLNSEYLLTEKTLHHLALIYAAL
VSFGLNSEELDVKLIIAPGVEATALIIRQIADHSLMTSKRDPHEWLDKSWLKVSPSEEEMYLLDFPCINP
LVAQLMLNKGPSLHWILLATLCQLQELLPEVPEKVLKHFCSITSLFKIGSSSITKSPQISSPQENRNQIS
TLSSQSSASDLDSVIQEHNEYYQYLGLGETVQEDKTTILNDNSSIMELKEISSFLPPVTSYNQTSYWKDS
SCKSNIGQNTPFLINIESRRPAYNSFLNHSDSESDVFSLGLTQMNCETIKSPTDTQKRVSVVPRFINSQK
RRTHEAKGFINKDVSDPIFSLEGTQSPLHWNFKKNIWEQENHPFNLQYGAQQTACNKLYSQKGNLFTDQQ
KCLSDESEGLTCESSKDETFWRELPSVPSLDLFRASDSNANQKEFNSLYFYQRAGKSLGQKRHHESSFNS
GDKESLTGFMCSQLPQFKKRRLAYEKVPGRVDGQTRLRFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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