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Report for CCDS94461.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
94461.1 |
Public |
Homo sapiens |
9 |
SHOC1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:158401](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:94461.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:158401](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 9 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108
Review status: Reviewed (by RefSeq and Havana)
Attributes |
Inferred exon combination |
Sequence IDs included in CCDS 94461.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000682961.1 |
ENSP00000508388.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000682961.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000508388.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000682961](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000508388](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001378211.1 |
NP_001365140.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001378211.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001365140.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001378211](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001365140](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001365140.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 94461.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4527 nt): ATGTTTTCAGCATTGAAATATCATGCAATAGACTATTTATATGAGAATGTGGTTAGAAAGAAGTTTTACA GAGATGCTTTATTGCTTCGAATCCCTTCATGTTTATATCAAGATGAAAGTTACCATGTAGCAGTTACTGA TAATAAATTTAGGAGGCCATGGACGAGAGTCTCAGCTGTTTCAGTTCCGGGAATGACAGATACCTCAGTC TTGGACCAATGGAAAGCAAGTTTCTTTGTGGAGGATTTCCTTGAGAAAAAAACAATTACAAGAATGGTGA CCCAGATTAATTGTGAATTTGAGGAAGTTGTTCCAAGTTCAAATCCAGACTCCCAAATTGAAGTAGAGGA GGTCAGTTTATACACCCACATGGACTACAATGAAGTCTTTACCCCTGTCAGTTGTTTAGAAAAATGTTCA GCACTTCAAAACCAGAACCAAGATTTATTTATTGATGATAAAGGAATACTTTTTGTAAGTAGTAGAAAAC ACCTACCAACTTTGCCTACTCTCTTGAGTAGACTAAAACTGTTTTTGGTAAAGGATCCTCTTTTAGATTT CAAAGGACAGATCTTCACAGAAGCTAATTTTTCCAGGGAATGTTTCTCTCTTCAAGAAACTTTGGAAGCT TTTGTGAAAGAAGATTTTTGTATGGATAAAGTGAACTTTTGTCAAGAGAAACTAGAAGATACAATATGTT TAAATGAGCCGTCAAGTTTTCTTATTGAGTATGAATTCTTAATACCTCCAAGCCTCAAACCAGAAATTGA TATTCCATCACTCTCAGAACTGAAGGAGTTATTAAACCCAGTGCCAGAAATAATAAACTATGTAGATGAA AAGGAAAAGCTTTTTGAAAGAGATCTTACTAACAAGCATGGAATTGAGGATATCGGGGATATAAAATTCA GCTCCACAGAGATTTTGACCATTCAAAGCCAGAGTGAACCAGAAGAGTGCAGTAAACCAGGAGAGTTAGA AATGCCACTAACTCCTCTATTCCTAACATGCCAACATTCTTCAGTGAATTCATTACGTACAGAACTTCAG ACATTTCCATTATCTCCGGTTTGTAAAATTAATTTGCTTACTGCTGAAGAATCAGCTAATGAATACTACA TGATGTGGCAATTAGAAAGATGTAGAAGCCCTTTGAACCCATTTTTGCTTACAGTGCCAAGAATTCAAGA GCCCCACAGCCAATATTCAGTTACAGATTTGAAAAAGATATTTTCTGTTAAAGAAGAAAGCCTTGTGATT AATCTGGAAAAGGCAGAGTGGTGGAAACAAGCAGGACTAAATCTGAAAATGATGGAAACATTGGAACATC TGAATACATATTTATGTCATGATAATTTGTCTTCTAATGACACTAAAATTGAGATATTTTTGCCTACGAA AGTGCTTCAATTAGAATCATGTCTAGAACATAAAAGTCATTCTTCACCTATTGCACTTATTGATGAAAAA TCTACAAATGCTCATTTATCACTTCCACAAAAGAGTCCATCTCTGGCAAAAGAAGTACCAGATCTATGTT TTTCTGATGACTATTTCTCTGATAAAGGAGCAGCAAAAGAAGAAAAACCAAAGAATGACCAAGAACCAGT AAACAGAATAATCCAAAAGAAAGAAAATAACGATCACTTTGAACTTGACTGCACAGGACCATCTATTAAA TCACCTTCCTCTTCAATAATTAAAAAAGCATCTTTTGAACATGGCAAAAAACAAGAGAATGATTTGGACC TTTTGAGCGACTTTATTATGCTGCGAAATAAATATAAGACTTGCACCTCAAAGACTGAAGTCACAAACAG TGATGAAAAACATGATAAAGAAGCATGTTCTTTGACACTTCAAGAAGAAAGTCCTATTGTTCATATTAAT AAAACCCTGGAGGAAATAAATCAGGAAAGGGGAACAGATAGTGTCATTGAAATTCAAGCGTCAGATAGCC AGTGCCAAGCATTTTGCCTCCTCGAAGCAGCAGCTTCTCCTATCTTAAAAAACCTTGTATCCTTGTGTAC CCTCCCTACTGCTAATTGGAAATTTGCCACTGTTATTTTTGACCAAACAAGGTTTCTCTTAAAGGAACAA GAAAAAGTAGTAAGTGATGCTGTTCGCCAAGGTACAATTGATGAAAGAGAAATGACTTTCAAGCATGCCG CTCTCTTACATCTTCTGGTAACAATTAGAGATGTCCTTTTAACATGCAGCTTGGACACAGCATTGGGATA TTTGTCGAAGGCAAAAGATATCTACAACAGCATTTTAGGCCCCTATTTGGGTGACATTTGGAGACAGCTG GAGATTGTACAGTTTATTAGGGGGAAAAAGCCTGAAACCAACTACAAGATACAAGAATTGCAATGTCAGA TACTAAGTTGGATGCAAAGTCAACAGCAAATTAAGGTACTGATTATAATAAGAATGGACTCAGACGGTGA AAAACATTTTCTCATTAAAATTCTTAACAAAATAGAAGGTTTAACACTGACTGTCCTTCATTCAAATGAA AGAAAAGATTTTCTGGAATCTGAAGGTGTTTTAAGGGGTACAAGTTCCTGTGTAGTTGTACATAATCAAT ATATTGGAGCAGATTTCCCCTGGAGTAATTTCTCATTTGTGGTGGAATACAATTATGTGGAAGACTCTTG TTGGACTAAACACTGCAAAGAGTTGAATATTCCTTACATGGCCTTTAAAGTGATTCTTCCAGACACAGTT TTAGAAAGAAGCACCTTGCTGGATAGATTTGGAGGTTTTCTTTTGGAAATTCAGATTCCATATGTGTTTT TTGCATCTGAAGGACTTCTTAATACTCCAGACATACTTCAGCTGCTAGAATCCAACTATAACATCTCACT AGTAGAGAGAGGCTGCAGTGAGTCATTGAAACTCTTTGGAAGTTCAGAGTGTTATGTAGTGGTGACAATT GATGAACACACTGCCATAATTTTGCAGGATCTAGAAGAATTGAATTATGAGAAGGCATCAGACAATATCA TTATGAGGCTGATGGCATTATCATTACAGTACAGATATTGTTGGATAATTTTATATACCAAAGAAACATT AAATTCAGAGTATCTGCTTACAGAAAAGACACTTCATCACCTAGCACTGATTTATGCAGCTTTGGTTTCA TTTGGGCTAAACTCTGAAGAACTGGATGTAAAGCTTATAATTGCCCCAGGAGTAGAAGCAACTGCCTTGA TAATTCGACAAATTGCTGACCACAGTTTAATGACCTCAAAGAGAGATCCTCATGAATGGTTGGATAAATC CTGGCTTAAAGTTTCACCATCTGAGGAAGAAATGTACTTACTTGATTTTCCATGTATTAACCCATTGGTG GCTCAGCTCATGCTAAATAAAGGACCTTCACTGCATTGGATATTATTAGCAACTCTGTGTCAACTTCAGG AACTCCTACCTGAAGTCCCAGAAAAAGTGTTAAAGCATTTTTGTAGCATCACTTCCCTATTCAAGATTGG TTCTTCTTCCATAACAAAATCACCGCAAATTTCGTCACCTCAGGAAAATAGGAATCAGATTAGTACCTTG TCTTCTCAAAGTTCAGCTTCTGATTTAGACTCTGTCATTCAAGAACATAATGAATATTATCAGTATTTAG GATTAGGAGAGACAGTGCAGGAAGACAAAACCACCATTTTGAATGACAACTCTTCCATTATGGAACTAAA AGAAATCTCAAGTTTTTTACCACCTGTGACTTCATACAATCAGACCAGCTACTGGAAAGACTCCAGCTGT AAATCTAATATAGGGCAGAATACTCCTTTTCTAATTAATATAGAATCAAGGAGACCGGCTTATAACTCCT TTCTAAACCACAGTGATTCAGAGTCAGATGTCTTTTCTTTGGGTCTAACACAAATGAACTGTGAAACTAT AAAATCACCAACTGACACTCAGAAGAGAGTGTCAGTTGTCCCCCGTTTTATAAATTCTCAGAAAAGGAGA ACACATGAAGCAAAAGGTTTCATAAATAAAGATGTATCGGACCCTATCTTTTCACTAGAGGGCACTCAAT CTCCTCTTCATTGGAACTTTAAGAAAAATATATGGGAACAAGAGAATCACCCGTTCAACTTACAATATGG TGCACAGCAGACTGCATGTAACAAATTGTACTCTCAGAAAGGTAATTTATTCACTGATCAGCAAAAATGT CTATCAGATGAGTCTGAAGGCCTCACATGTGAAAGTTCAAAAGATGAGACTTTCTGGAGAGAATTACCAT CTGTCCCCAGTTTGGATTTATTTCGTGCTTCTGATTCTAATGCAAATCAAAAAGAATTCAACAGCCTTTA TTTCTACCAAAGAGCTGGAAAAAGTTTAGGACAGAAAAGGCACCATGAATCTTCATTTAACTCAGGAGAC AAGGAATCATTAACAGGTTTTATGTGCTCACAACTACCACAATTCAAAAAACGACGTCTAGCATATGAAA AAGTCCCTGGTAGAGTTGATGGGCAGACTCGGCTGAGGTTTTTTTGA
Translation (1508 aa): MFSALKYHAIDYLYENVVRKKFYRDALLLRIPSCLYQDESYHVAVTDNKFRRPWTRVSAVSVPGMTDTSV LDQWKASFFVEDFLEKKTITRMVTQINCEFEEVVPSSNPDSQIEVEEVSLYTHMDYNEVFTPVSCLEKCS ALQNQNQDLFIDDKGILFVSSRKHLPTLPTLLSRLKLFLVKDPLLDFKGQIFTEANFSRECFSLQETLEA FVKEDFCMDKVNFCQEKLEDTICLNEPSSFLIEYEFLIPPSLKPEIDIPSLSELKELLNPVPEIINYVDE KEKLFERDLTNKHGIEDIGDIKFSSTEILTIQSQSEPEECSKPGELEMPLTPLFLTCQHSSVNSLRTELQ TFPLSPVCKINLLTAEESANEYYMMWQLERCRSPLNPFLLTVPRIQEPHSQYSVTDLKKIFSVKEESLVI NLEKAEWWKQAGLNLKMMETLEHLNTYLCHDNLSSNDTKIEIFLPTKVLQLESCLEHKSHSSPIALIDEK STNAHLSLPQKSPSLAKEVPDLCFSDDYFSDKGAAKEEKPKNDQEPVNRIIQKKENNDHFELDCTGPSIK SPSSSIIKKASFEHGKKQENDLDLLSDFIMLRNKYKTCTSKTEVTNSDEKHDKEACSLTLQEESPIVHIN KTLEEINQERGTDSVIEIQASDSQCQAFCLLEAAASPILKNLVSLCTLPTANWKFATVIFDQTRFLLKEQ EKVVSDAVRQGTIDEREMTFKHAALLHLLVTIRDVLLTCSLDTALGYLSKAKDIYNSILGPYLGDIWRQL EIVQFIRGKKPETNYKIQELQCQILSWMQSQQQIKVLIIIRMDSDGEKHFLIKILNKIEGLTLTVLHSNE RKDFLESEGVLRGTSSCVVVHNQYIGADFPWSNFSFVVEYNYVEDSCWTKHCKELNIPYMAFKVILPDTV LERSTLLDRFGGFLLEIQIPYVFFASEGLLNTPDILQLLESNYNISLVERGCSESLKLFGSSECYVVVTI DEHTAIILQDLEELNYEKASDNIIMRLMALSLQYRYCWIILYTKETLNSEYLLTEKTLHHLALIYAALVS FGLNSEELDVKLIIAPGVEATALIIRQIADHSLMTSKRDPHEWLDKSWLKVSPSEEEMYLLDFPCINPLV AQLMLNKGPSLHWILLATLCQLQELLPEVPEKVLKHFCSITSLFKIGSSSITKSPQISSPQENRNQISTL SSQSSASDLDSVIQEHNEYYQYLGLGETVQEDKTTILNDNSSIMELKEISSFLPPVTSYNQTSYWKDSSC KSNIGQNTPFLINIESRRPAYNSFLNHSDSESDVFSLGLTQMNCETIKSPTDTQKRVSVVPRFINSQKRR THEAKGFINKDVSDPIFSLEGTQSPLHWNFKKNIWEQENHPFNLQYGAQQTACNKLYSQKGNLFTDQQKC LSDESEGLTCESSKDETFWRELPSVPSLDLFRASDSNANQKEFNSLYFYQRAGKSLGQKRHHESSFNSGD KESLTGFMCSQLPQFKKRRLAYEKVPGRVDGQTRLRFF
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