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Report for CCDS94588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94588.1 Public Homo sapiens X RPGR 24 110 108 CCDS HistoryNCBI Gene:6103Re-query CCDS DB by CCDS ID:94588.1Re-query CCDS DB by GeneID:6103See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94588.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000644238.1 ENSP00000496728.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644238.1Link to Ensembl Protein Viewer:ENSP00000496728.1Re-query CCDS DB by Nucleotide ID:ENST00000644238Re-query CCDS DB by Protein ID:ENSP00000496728
Original member Current member NCBI NM_001367251.1 NP_001354180.1 Accepted alive Link to Nucleotide Sequence:NM_001367251.1Link to Protein Sequence:NP_001354180.1Re-query CCDS DB by Nucleotide ID:NM_001367251Re-query CCDS DB by Protein ID:NP_001354180Link to BLAST:NP_001354180.1

Chromosomal Locations for CCDS 94588.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38269626 38269832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38273386 38273477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38275089 38275146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38276587 38276772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38290959 38291024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38291393 38291484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38297284 38297452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38301247 38301371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38304635 38304790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38310615 38310773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38317316 38317465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38318829 38318987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38321027 38321089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38322853 38322945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38323399 38323524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38327340 38327367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGAGGGAGCCGGAAGAGCTGATGCCCGATTCGGGTGCTGTGTTTACATTTGGGAAAAGTAAATTTGCTG
AAAATAATCCCGGTAAATTCTGGTTTAAAAATGATGTCCCTGTACATCTTTCATGTGGAGATGAACATTC
TGCTGTTGTTACCGGAAATAATAAACTTTACATGTTTGGCAGTAACAACTGGGGTCAGTTAGGATTAGGA
TCAAAGTCAGCCATCAGCAAGCCAACATGTGTCAAAGCTCTAAAACCTGAAAAAGTGAAATTAGCTGCCT
GTGGAAGGAACCACACCCTGGTGTCAACAGAAGGAGGCAATGTATATGCAACTGGTGGAAATAATGAAGG
ACAGTTGGGGCTTGGTGACACCGAAGAAAGAAACACTTTTCATGTAATTAGCTTTTTTACATCCGAGCAT
AAGATTAAGCAGCTGTCTGCTGGATCTAATACTTCAGCTGCCCTAACTGAGGATGGAAGACTTTTTATGT
GGGGTGACAATTCCGAAGGGCAAATTGGTTTAAAAAATGTAAGTAATGTCTGTGTCCCTCAGCAAGTGAC
CATTGGGAAACCTGTCTCCTGGATCTCTTGTGGATATTACCATTCAGCTTTTGTAACAACAGATGGTGAG
CTATATGTGTTTGGAGAACCTGAGAATGGGAAGTTAGGTCTTCCCAATCAGCTCCTGGGCAATCACAGAA
CACCCCAGCTGGTGTCTGAAATTCCGGAGAAGGTGATCCAAGTAGCCTGTGGTGGAGAGCATACTGTGGT
TCTCACGGAGAATGCTGTGTATACCTTTGGGCTGGGACAATTTGGTCAGCTGGGTCTTGGCACTTTTCTT
TTTGAAACTTCAGAACCCAAAGTCATTGAGAATATTAGGGATCAAACAATAAGTTATATTTCTTGTGGAG
AAAATCACACAGCTTTGATAACAGATATCGGCCTTATGTATACTTTTGGAGATGGTCGCCACGGAAAATT
AGGACTTGGACTGGAGAATTTTACCAATCACTTCATTCCTACTTTGTGCTCTAATTTTTTGAGGTTTATA
GTTAAATTGGAGAGGTCTCCAGATTCTTTTTCAATGAGGAGAACACTACCTCCAATAGAAGGGACTCTTG
GCCTTTCTGCTTGTTTTCTCCCCAATTCAGTCTTTCCACGATGTTCTGAGAGAAACCTCCAAGAGAGTGT
CTTATCTGAACAGGACCTCATGCAGCCAGAGGAACCAGATTATTTGCTAGATGAAATGACCAAAGAAGCA
GAGATAGATAATTCTTCAACTGTAGAAAGCCTTGGAGAAACTACTGATATCTTAAACATGACACACATCA
TGAGCCTGAATTCCAATGAAAAGTCATTAAAATTATCACCAGTTCAGAAACAAAAGGATCATGAATTTTC
TAAAACTGAGGAACTAAAACTAGAAGATGTGGATGAGGAAATTAATGCTGAAAATGTGGAAAGCAAGAAG
AAAACTGTGGGAGATGATGAAAGTGTTCCTACAGGTTATCACAGTAAAACAGAAGGAGCAGAAAGAACCA
ATGATGATAGCTCAGCTGAAACTATTGAAAAGAAAGAAAAAGCCAACCTAGAGGAACGGGCCATTTGTGA
GTACAATGAAAACCCAAAAGGATACATGCTTGATGATGCAGATAGCAGTTCATTAGAAATCCTAGAAAAC
AGTGAAACAACACCAAGCAAAGACATGAAAAAAACAAAGAAGATTTTTCTGTTCAAAAGAGTCCCCTCAA
TAAATCAAAAGATTGTCAAGAATAACAATGAGCCGCTCCCAGAGATAAAATCCATAGGAGACCAGATCAT
TTTAAAAAGTGATAATAAAGATGCCGACCAGAACCACATGAGTCAGAATCATCAGAATATCCCACCAACA
AATACAGAGAGAAGATCAAAATCCTGTACAATACTATAA

Translation (642 aa):
MREPEELMPDSGAVFTFGKSKFAENNPGKFWFKNDVPVHLSCGDEHSAVVTGNNKLYMFGSNNWGQLGLG
SKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVISFFTSEH
KIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGKPVSWISCGYYHSAFVTTDGE
LYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPEKVIQVACGGEHTVVLTENAVYTFGLGQFGQLGLGTFL
FETSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGLENFTNHFIPTLCSNFLRFI
VKLERSPDSFSMRRTLPPIEGTLGLSACFLPNSVFPRCSERNLQESVLSEQDLMQPEEPDYLLDEMTKEA
EIDNSSTVESLGETTDILNMTHIMSLNSNEKSLKLSPVQKQKDHEFSKTEELKLEDVDEEINAENVESKK
KTVGDDESVPTGYHSKTEGAERTNDDSSAETIEKKEKANLEERAICEYNENPKGYMLDDADSSSLEILEN
SETTPSKDMKKTKKIFLFKRVPSINQKIVKNNNEPLPEIKSIGDQIILKSDNKDADQNHMSQNHQNIPPT
NTERRSKSCTIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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