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Report for CCDS9461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9461.1 Public Homo sapiens 13 EDNRB 24 110 108 CCDS HistoryNCBI Gene:1910Re-query CCDS DB by CCDS ID:9461.1Re-query CCDS DB by GeneID:1910See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9461.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000475537.2 ENSP00000487082.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000475537.2Link to Ensembl Protein Viewer:ENSP00000487082.2Re-query CCDS DB by Nucleotide ID:ENST00000475537Re-query CCDS DB by Protein ID:ENSP00000487082
Original member Current member EBI ENST00000646607.2 ENSP00000493527.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000646607.2Link to Ensembl Protein Viewer:ENSP00000493527.1Re-query CCDS DB by Nucleotide ID:ENST00000646607Re-query CCDS DB by Protein ID:ENSP00000493527
Original member Current member EBI ENST00000646948.1 ENSP00000493895.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646948.1Link to Ensembl Protein Viewer:ENSP00000493895.1Re-query CCDS DB by Nucleotide ID:ENST00000646948Re-query CCDS DB by Protein ID:ENSP00000493895
Original member Current member EBI ENST00000646605.1 ENSP00000494278.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646605.1Link to Ensembl Protein Viewer:ENSP00000494278.1Re-query CCDS DB by Nucleotide ID:ENST00000646605Re-query CCDS DB by Protein ID:ENSP00000494278
Original member Current member NCBI NM_000115.5 NP_000106.1 Accepted alive Link to Nucleotide Sequence:NM_000115.5Link to Protein Sequence:NP_000106.1Re-query CCDS DB by Nucleotide ID:NM_000115Re-query CCDS DB by Protein ID:NP_000106Link to BLAST:NP_000106.1
Original member Current member NCBI NM_001122659.3 NP_001116131.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001122659.3Link to Protein Sequence:NP_001116131.1Re-query CCDS DB by Nucleotide ID:NM_001122659Re-query CCDS DB by Protein ID:NP_001116131Link to BLAST:NP_001116131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000106.1 442 P24530-1 442 100% 0 0
NP_001116131.1 442 P24530-1 442 100% 0 0

Chromosomal Locations for CCDS 9461.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 77898200 77898334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77899859 77899967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77900521 77900654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77901058 77901207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77903156 77903360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77903495 77903607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77918091 77918573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGCAGCCGCCTCCAAGTCTGTGCGGACGCGCCCTGGTTGCGCTGGTTCTTGCCTGCGGCCTGTCGCGGA
TCTGGGGAGAGGAGAGAGGCTTCCCGCCTGACAGGGCCACTCCGCTTTTGCAAACCGCAGAGATAATGAC
GCCACCCACTAAGACCTTATGGCCCAAGGGTTCCAACGCCAGTCTGGCGCGGTCGTTGGCACCTGCGGAG
GTGCCTAAAGGAGACAGGACGGCAGGATCTCCGCCACGCACCATCTCCCCTCCCCCGTGCCAAGGACCCA
TCGAGATCAAGGAGACTTTCAAATACATCAACACGGTTGTGTCCTGCCTTGTGTTCGTGCTGGGGATCAT
CGGGAACTCCACACTTCTGAGAATTATCTACAAGAACAAGTGCATGCGAAACGGTCCCAATATCTTGATC
GCCAGCTTGGCTCTGGGAGACCTGCTGCACATCGTCATTGACATCCCTATCAATGTCTACAAGCTGCTGG
CAGAGGACTGGCCATTTGGAGCTGAGATGTGTAAGCTGGTGCCTTTCATACAGAAAGCCTCTGTGGGAAT
CACTGTGCTGAGTCTATGTGCTCTGAGTATTGACAGATATCGAGCTGTTGCTTCTTGGAGTAGAATTAAA
GGAATTGGGGTTCCAAAATGGACAGCAGTAGAAATTGTTTTGATTTGGGTGGTCTCTGTGGTTCTGGCTG
TCCCTGAAGCCATAGGTTTTGATATAATTACGATGGACTACAAAGGAAGTTATCTGCGAATCTGCTTGCT
TCATCCCGTTCAGAAGACAGCTTTCATGCAGTTTTACAAGACAGCAAAAGATTGGTGGCTATTCAGTTTC
TATTTCTGCTTGCCATTGGCCATCACTGCATTTTTTTATACACTAATGACCTGTGAAATGTTGAGAAAGA
AAAGTGGCATGCAGATTGCTTTAAATGATCACCTAAAGCAGAGACGGGAAGTGGCCAAAACCGTCTTTTG
CCTGGTCCTTGTCTTTGCCCTCTGCTGGCTTCCCCTTCACCTCAGCAGGATTCTGAAGCTCACTCTTTAT
AATCAGAATGATCCCAATAGATGTGAACTTTTGAGCTTTCTGTTGGTATTGGACTATATTGGTATCAACA
TGGCTTCACTGAATTCCTGCATTAACCCAATTGCTCTGTATTTGGTGAGCAAAAGATTCAAAAACTGCTT
TAAGTCATGCTTATGCTGCTGGTGCCAGTCATTTGAAGAAAAACAGTCCTTGGAGGAAAAGCAGTCGTGC
TTAAAGTTCAAAGCTAATGATCACGGATATGACAACTTCCGTTCCAGTAATAAATACAGCTCATCTTGA

Translation (442 aa):
MQPPPSLCGRALVALVLACGLSRIWGEERGFPPDRATPLLQTAEIMTPPTKTLWPKGSNASLARSLAPAE
VPKGDRTAGSPPRTISPPPCQGPIEIKETFKYINTVVSCLVFVLGIIGNSTLLRIIYKNKCMRNGPNILI
ASLALGDLLHIVIDIPINVYKLLAEDWPFGAEMCKLVPFIQKASVGITVLSLCALSIDRYRAVASWSRIK
GIGVPKWTAVEIVLIWVVSVVLAVPEAIGFDIITMDYKGSYLRICLLHPVQKTAFMQFYKTAKDWWLFSF
YFCLPLAITAFFYTLMTCEMLRKKSGMQIALNDHLKQRREVAKTVFCLVLVFALCWLPLHLSRILKLTLY
NQNDPNRCELLSFLLVLDYIGINMASLNSCINPIALYLVSKRFKNCFKSCLCCWCQSFEEKQSLEEKQSC
LKFKANDHGYDNFRSSNKYSSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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