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Report for CCDS948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
948.1 Public Homo sapiens 1 C1orf54 24 110 108 CCDS HistoryNCBI Gene:79630Re-query CCDS DB by CCDS ID:948.1Re-query CCDS DB by GeneID:79630See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 948.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369099.8 ENSP00000358095.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369099.8Link to Ensembl Protein Viewer:ENSP00000358095.3Re-query CCDS DB by Nucleotide ID:ENST00000369099Re-query CCDS DB by Protein ID:ENSP00000358095
Original member Current member EBI ENST00000369102.5 ENSP00000358098.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369102.5Link to Ensembl Protein Viewer:ENSP00000358098.1Re-query CCDS DB by Nucleotide ID:ENST00000369102Re-query CCDS DB by Protein ID:ENSP00000358098
Original member Current member NCBI NM_001301040.1 NP_001287969.1 Accepted alive Link to Nucleotide Sequence:NM_001301040.1Link to Protein Sequence:NP_001287969.1Re-query CCDS DB by Nucleotide ID:NM_001301040Re-query CCDS DB by Protein ID:NP_001287969Link to BLAST:NP_001287969.1
Original member Current member NCBI NM_024579.4 NP_078855.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024579.4Link to Protein Sequence:NP_078855.2Re-query CCDS DB by Nucleotide ID:NM_024579Re-query CCDS DB by Protein ID:NP_078855Link to BLAST:NP_078855.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287969.1 131 Q8WWF1 131 100% 0 0
NP_078855.2 131 Q8WWF1 131 100% 0 0

Chromosomal Locations for CCDS 948.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 150272818 150272863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150274087 150274170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150275741 150275799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150276522 150276632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150279643 150279738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGGATGTCCTCTTTGTAGCCATCTTTGCTGTGCCACTTATCCTGGGACAAGAATATGAGGATGAAGAAA
GACTGGGAGAGGATGAATATTATCAGGTGGTCTATTATTATACAGTCACCCCCAGTTATGATGACTTTAG
TGCAGATTTCACCATTGATTACTCCATATTTGAGTCAGAGGACAGGCTGAACAGGTTGGATAAGGACATA
ACAGAAGCAATAGAGACTACCATTAGTCTTGAAACAGCACGTGCAGACCATCCGAAGCCTGTAACTGTGA
AACCAGTAACAACGGAACCTAGTCCAGATCTGAACGATGCCGTGTCCAGTTTGCGAAGTCCTATTCCCCT
CCTCCTGTCGTGTGCCTTTGTTCAGGTGGGGATGTATTTCATGTAG

Translation (131 aa):
MDVLFVAIFAVPLILGQEYEDEERLGEDEYYQVVYYYTVTPSYDDFSADFTIDYSIFESEDRLNRLDKDI
TEAIETTISLETARADHPKPVTVKPVTTEPSPDLNDAVSSLRSPIPLLLSCAFVQVGMYFM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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