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Report for CCDS949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
949.1 Public Homo sapiens 1 CIART 24 110 108 CCDS HistoryNCBI Gene:148523Re-query CCDS DB by CCDS ID:949.1Re-query CCDS DB by GeneID:148523See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 949.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290363.6 ENSP00000290363.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000290363.6Link to Ensembl Protein Viewer:ENSP00000290363.5Re-query CCDS DB by Nucleotide ID:ENST00000290363Re-query CCDS DB by Protein ID:ENSP00000290363
Original member Current member EBI ENST00000369095.5 ENSP00000358091.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369095.5Link to Ensembl Protein Viewer:ENSP00000358091.1Re-query CCDS DB by Nucleotide ID:ENST00000369095Re-query CCDS DB by Protein ID:ENSP00000358091
Original member Current member NCBI NM_001300838.2 NP_001287767.1 Accepted alive Link to Nucleotide Sequence:NM_001300838.2Link to Protein Sequence:NP_001287767.1Re-query CCDS DB by Nucleotide ID:NM_001300838Re-query CCDS DB by Protein ID:NP_001287767Link to BLAST:NP_001287767.1
Original member Current member NCBI NM_144697.4 NP_653298.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144697.4Link to Protein Sequence:NP_653298.1Re-query CCDS DB by Nucleotide ID:NM_144697Re-query CCDS DB by Protein ID:NP_653298Link to BLAST:NP_653298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287767.1 385 Q8N365-1 385 100% 0 0
NP_653298.1 385 Q8N365-1 385 100% 0 0

Chromosomal Locations for CCDS 949.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 150283268 150283633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150283805 150283880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150284426 150284504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150284597 150284708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150286430 150286954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGATTCTCCATCTAGCGTTTCTTCCTATTCCTCCTACTCTCTCTCTTCGTCTTTTCCCACCTCCCCAG
TGAACAGTGACTTTGGCTTCCCCTCTGATAGTGAGAGGGAGGACAAGGGGGCCCATGGGCCCAGGCCAGA
CACTGTTGGGCAGAGGGGAGGTTCACGGCCCAGCCCGGGTCCTATCCGCTGCAGGCATCGATCGAAGGTT
TCCGGTAACCAGCATACACCATCTCATCCGAAACAGCGGGGTTCGGCTTCTCCTATGGCAGGATCTGGGG
CGAAAAGATCAAGAGATGGTGAACTGGAGACCAGTCTAAACACCCAAGGTTGTACCACAGAGGGAGACCT
GCTGTTTGCCCAGAAGTGTAAAGAACTCCAAGGATTTATACCTCCTCTCACAGACCTACTCAATGGGCTG
AAGATGGGTCGTTTTGAGAGAGGATTAAGCAGTTTTCAGCAGAGTGTGGCAATGGACAGGATCCAGCGTA
TTGTAGGTGTTTTGCAGAAGCCACAGATGGGGGAACGTTACCTAGGAACCTTGCTACAGGTAGAAGGGAT
GTTAAAGACTTGGTTTCCACAAATAGCTGCCCAGAAGTCATCATTGGGTGGTGGCAAGCATCAGCTGACC
AAGCATTTTCCAAGCCACCACAGTGATTCAGCTGCTTCCTCTCCTGCATCTCCTATGGAAAAGATGGACC
AGACACAGCTAGGACATCTAGCTTTAAAACCAAAGCAGCCTTGGCACCTCACACAATGGCCAGCTATGAA
CCTCACCTGGATCCACACCACTCCAATTTGCAACCCCCCTCTCAGCTCCCCAGGTACTATCTCCTTTAGC
CATGGTCCTTTAGGCACTGGAACCGGCATTGGCGTCATTCTTTTCCTCCAGCATGGAGTGCAACCCTTCA
CCCACTCTGCCCCAACCACCCCAGTCCCACCTACTACAGCATCTCCTGTCATCCCTGGTGAGCCTATGAA
ACTATCTGGAGAGGGTCCTCGTTGCTACAGTTTGCCAGTAACTCTGCCATCAGACTGGAGCTATACCCTA
TCCCCTCCCAGTCTACCCACCTTGGCCAGAAAGATGACCATAGGACACCGGGAGCAGCAGAGAAGCCATC
CTCCAGTTGCTGCTGATGCTCATCTTCTCAACCTCTAG

Translation (385 aa):
MDSPSSVSSYSSYSLSSSFPTSPVNSDFGFPSDSEREDKGAHGPRPDTVGQRGGSRPSPGPIRCRHRSKV
SGNQHTPSHPKQRGSASPMAGSGAKRSRDGELETSLNTQGCTTEGDLLFAQKCKELQGFIPPLTDLLNGL
KMGRFERGLSSFQQSVAMDRIQRIVGVLQKPQMGERYLGTLLQVEGMLKTWFPQIAAQKSSLGGGKHQLT
KHFPSHHSDSAASSPASPMEKMDQTQLGHLALKPKQPWHLTQWPAMNLTWIHTTPICNPPLSSPGTISFS
HGPLGTGTGIGVILFLQHGVQPFTHSAPTTPVPPTTASPVIPGEPMKLSGEGPRCYSLPVTLPSDWSYTL
SPPSLPTLARKMTIGHREQQRSHPPVAADAHLLNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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