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Report for CCDS968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
968.1 Public Homo sapiens 1 CTSS 24 110 108 CCDS HistoryNCBI Gene:1520Re-query CCDS DB by CCDS ID:968.1Re-query CCDS DB by GeneID:1520See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 968.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368985.8 ENSP00000357981.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368985.8Link to Ensembl Protein Viewer:ENSP00000357981.3Re-query CCDS DB by Nucleotide ID:ENST00000368985Re-query CCDS DB by Protein ID:ENSP00000357981
Original member Current member EBI ENST00000472977.7 ENSP00000475176.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000472977.7Link to Ensembl Protein Viewer:ENSP00000475176.2Re-query CCDS DB by Nucleotide ID:ENST00000472977Re-query CCDS DB by Protein ID:ENSP00000475176
Original member Current member EBI ENST00000607427.2 ENSP00000475557.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000607427.2Link to Ensembl Protein Viewer:ENSP00000475557.2Re-query CCDS DB by Nucleotide ID:ENST00000607427Re-query CCDS DB by Protein ID:ENSP00000475557
Original member Current member EBI ENST00000681444.1 ENSP00000505359.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681444.1Link to Ensembl Protein Viewer:ENSP00000505359.1Re-query CCDS DB by Nucleotide ID:ENST00000681444Re-query CCDS DB by Protein ID:ENSP00000505359
Original member Current member NCBI NM_004079.5 NP_004070.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004079.5Link to Protein Sequence:NP_004070.3Re-query CCDS DB by Nucleotide ID:NM_004079Re-query CCDS DB by Protein ID:NP_004070Link to BLAST:NP_004070.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004070.3 331 P25774-1 331 100% 0 0

Chromosomal Locations for CCDS 968.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 150733046 150733145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150747777 150747879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150750006 150750171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150751781 150752008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150755001 150755150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150757858 150757980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150764638 150764763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGAAACGGCTGGTTTGTGTGCTCTTGGTGTGCTCCTCTGCAGTGGCACAGTTGCATAAAGATCCTACCC
TGGATCACCACTGGCATCTCTGGAAGAAAACCTATGGCAAACAATACAAGGAAAAGAATGAAGAAGCAGT
ACGACGTCTCATCTGGGAAAAGAATCTAAAGTTTGTGATGCTTCACAACCTGGAGCATTCAATGGGAATG
CACTCATACGATCTGGGCATGAACCACCTGGGAGACATGACCAGTGAAGAAGTGATGTCTTTGATGAGTT
CCCTGAGAGTTCCCAGCCAGTGGCAGAGAAATATCACATATAAGTCAAACCCTAATCGGATATTGCCTGA
TTCTGTGGACTGGAGAGAGAAAGGGTGTGTTACTGAAGTGAAATATCAAGGTTCTTGTGGTGCTTGCTGG
GCTTTCAGTGCTGTGGGGGCCCTGGAAGCACAGCTGAAGCTGAAAACAGGAAAGCTGGTGTCTCTCAGTG
CCCAGAACCTGGTGGATTGCTCAACTGAAAAATATGGAAACAAAGGCTGCAATGGTGGCTTCATGACAAC
GGCTTTCCAGTACATCATTGATAACAAGGGCATCGACTCAGACGCTTCCTATCCCTACAAAGCCATGGAT
CAGAAATGTCAATATGACTCAAAATATCGTGCTGCCACATGTTCAAAGTACACTGAACTTCCTTATGGCA
GAGAAGATGTCCTGAAAGAAGCTGTGGCCAATAAAGGCCCAGTGTCTGTTGGTGTAGATGCGCGTCATCC
TTCTTTCTTCCTCTACAGAAGTGGTGTCTACTATGAACCATCCTGTACTCAGAATGTGAATCATGGTGTA
CTTGTGGTTGGCTATGGTGATCTTAATGGGAAAGAATACTGGCTTGTGAAAAACAGCTGGGGCCACAACT
TTGGTGAAGAAGGATATATTCGGATGGCAAGAAATAAAGGAAATCATTGTGGGATTGCTAGCTTTCCCTC
TTACCCAGAAATCTAG

Translation (331 aa):
MKRLVCVLLVCSSAVAQLHKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGM
HSYDLGMNHLGDMTSEEVMSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGACW
AFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD
QKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGV
LVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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