NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9696.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9696.2 Public Homo sapiens 14 VCPKMT 24 110 108 CCDS HistoryNCBI Gene:79609Re-query CCDS DB by CCDS ID:9696.2Re-query CCDS DB by GeneID:79609See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9696.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395860.7 ENSP00000379201.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395860.7Link to Ensembl Protein Viewer:ENSP00000379201.2Re-query CCDS DB by Nucleotide ID:ENST00000395860Re-query CCDS DB by Protein ID:ENSP00000379201
Original member Current member NCBI NM_024558.3 NP_078834.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024558.3Link to Protein Sequence:NP_078834.2Re-query CCDS DB by Nucleotide ID:NM_024558Re-query CCDS DB by Protein ID:NP_078834Link to BLAST:NP_078834.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078834.2 229 Q9H867-4 229 100% 0 0

Chromosomal Locations for CCDS 9696.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50109699 50109713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50112615 50112719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50114285 50114404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50115839 50115911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50116069 50116179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50116287 50116552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGCGGATACGCTGGAGTCCTCGCTGGAGGACCCACTGCGGAGCTTTGTGCGAGTTTTGGAGAAGCGGG
ATGGTACAGTGCTACGACTACAGCAGTATAGCTCCGGTGGCGTGGGTTGCGTTGTGTGGGACGCTGCCAT
TGTCCTTTCTAAATACCTGGAAACGCCCGAGTTTTCTGGCGACGGGGCCCACGCGCTGAGCCGGCGGTCG
GTGCTGGAGCTGGGTTCGGGCACCGGGGCCGTGGGGCTCATGGCTGCTACCCTCGGGGCTGATGTTGTAG
TCACCGATCTTGAGGAATTGCAAGACTTGCTGAAGATGAATATTAATATGAACAAGCATCTTGTCACTGG
TTCTGTTCAAGCCAAGGTACTGAAATGGGGGGAAGAAATAGAAGGCTTTCCTTCTCCACCCGACTTCATA
CTGATGGCCGACTGCATATACTATGAAGAGTCTTTGGAGCCATTGCTGAAAACTCTAAAAGATATCAGCG
GATTTGAAACTTGTATTATATGTTGTTATGAACAACGAACAATGGGGAAAAATCCAGAAATTGAGAAAAA
ATATTTTGAGCTCCTTCAGCTAGATTTTGACTTTGAAAAAATTCCTTTGGAAAAACATGATGAAGAGTAT
CGAAGTGAAGATATTCATATTATATACATCAGAAAGAAAAAATCGAAATTTCCATCGTGA

Translation (229 aa):
MADTLESSLEDPLRSFVRVLEKRDGTVLRLQQYSSGGVGCVVWDAAIVLSKYLETPEFSGDGAHALSRRS
VLELGSGTGAVGLMAATLGADVVVTDLEELQDLLKMNINMNKHLVTGSVQAKVLKWGEEIEGFPSPPDFI
LMADCIYYEESLEPLLKTLKDISGFETCIICCYEQRTMGKNPEIEKKYFELLQLDFDFEKIPLEKHDEEY
RSEDIHIIYIRKKKSKFPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH