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Report for CCDS9834.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9834.2 Public Homo sapiens 14 RPS6KL1 24 110 108 CCDS HistoryNCBI Gene:83694Re-query CCDS DB by CCDS ID:9834.2Re-query CCDS DB by GeneID:83694See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 9834.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9834.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354625.6 ENSP00000346644.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354625.6Link to Ensembl Protein Viewer:ENSP00000346644.3Re-query CCDS DB by Nucleotide ID:ENST00000354625Re-query CCDS DB by Protein ID:ENSP00000346644
Original member Current member EBI ENST00000557413.6 ENSP00000450567.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000557413.6Link to Ensembl Protein Viewer:ENSP00000450567.1Re-query CCDS DB by Nucleotide ID:ENST00000557413Re-query CCDS DB by Protein ID:ENSP00000450567
Original member Current member EBI ENST00000555647.5 ENSP00000452027.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555647.5Link to Ensembl Protein Viewer:ENSP00000452027.1Re-query CCDS DB by Nucleotide ID:ENST00000555647Re-query CCDS DB by Protein ID:ENSP00000452027
Original member Current member NCBI NM_031464.5 NP_113652.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031464.5Link to Protein Sequence:NP_113652.2Re-query CCDS DB by Nucleotide ID:NM_031464Re-query CCDS DB by Protein ID:NP_113652Link to BLAST:NP_113652.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113652.2 549 Q9Y6S9-1 549 100% 0 0

Chromosomal Locations for CCDS 9834.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 74907014 74907124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74907435 74907530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74908850 74908932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74909101 74909190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74909543 74910148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74911248 74911380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74911794 74911841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74918513 74918605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74919845 74919969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74921277 74921541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGAGCCTGGTGGCCTGTGAGTGCCTGCCCAGCCCCGGCCTGGAGCCTGAGCCTTGCTCACGAGCACGGT
CCCAAGCTCACGTGTACCTGGAGCAGATTCGCAACAGGGTGGCTCTGGGAGTGCCTGACATGACAAAACG
TGACTATCTGGTGGATGCGGCCACGCAGATCCGGCTGGCCCTGGAGCGCGATGTTAGTGAGGACTATGAG
GCGGCCTTCAACCACTATCAGAATGGCGTGGACGTGCTGCTCCGTGGCATACACGTTGACCCCAACAAGG
AGCGACGTGAGGCTGTGAAGCTGAAAATTACCAAATACCTGCGGCGGGCAGAGGAGATCTTCAACTGCCA
CCTGCAGCGGCCGCTGAGCAGTGGAGCCAGCCCCAGCGCGGGTTTCAGCAGCCTGAGGCTCCGGCCCATT
CGCACGCTGAGCTCTGCCGTGGAGCAGCTGAGGGGCTGCAGGGTGGTCGGGGTCATCGAGAAGGTGCAGC
TGGTCCAGGACCCGGCAACCGGAGGGACCTTTGTGGTGAAGAGCCTACCCAGGTGCCACATGGTGAGCAG
GGAGCGGCTGACCATCATCCCACACGGAGTCCCCTACATGACGAAGCTGCTCAGGTACTTTGTGAGCGAG
GACTCCATCTTCCTGCACCTGGAGCATGTGCAAGGAGGCACTCTCTGGTCCCACCTGCTCTCCCAGGCGC
ACTCCCGACATTCTGGGCTCAGCTCTGGCTCTACCCAGGAGAGGATGAAGGCTCAGCTCAACCCCCACCT
CAACCTCCTGACCCCAGCGAGGCTTCCCTCAGGCCATGCCCCTGGCCAGGACAGAATCGCCCTGGAGCCT
CCTAGGACTTCTCCGAACCTTCTCCTAGCTGGGGAGGCCCCATCCACCAGACCCCAGAGGGAGGCTGAAG
GTGAACCCACAGCCAGGACCAGCACCTCTGGCTCCTCGGACCTTCCAAAGGCCCCAGGTGGCCACCTGCA
CCTTCAAGCTAGGAGGGCTGGCCAGAACTCAGACGCTGGGCCCCCTCGGGGGCTCACTTGGGTTCCTGAG
GGGGCCGGCCCGGTGCTAGGGGGCTGTGGCCGAGGCATGGATCAGAGCTGCCTGTCAGCAGATGGGGCCG
GCCGGGGCTGTGGCAGGGCCACCTGGAGTGTGAGAGAGGAGCAGGTGAAGCAGTGGGCGGCAGAGATGCT
GGTAGCGCTGGAGGCGCTGCACGAGCAGGGGGTGCTGTGCCGGGACCTCCACCCCGGGAACCTGCTCCTG
GACCAGGCAGGTCACATCCGGCTCACATATTTTGGCCAGTGGTCAGAGGTGGAGCCCCAGTGCTGCGGGG
AGGCCGTGGACAATCTCTACAGCGCCCCAGAGGTGGGTGGGATTTCCGAGCTGACGGAAGCCTGTGACTG
GTGGAGCTTTGGGTCTCTACTGTATGAACTGCTGACGGGAATGGCACTGTCCCAGAGCCACCCTTCAGGA
ATCCAGGCCCACACCCAGCTCCAGCTGCCCGAGTGGCTCAGTCGCCCAGCGGCCTCTCTGCTGACTGAGC
TGCTGCAGTTCGAGCCTACCCGGCGCCTGGGCATGGGAGAAGGTGGTGTCAGCAAACTCAAGTCCCATCC
CTTTTTCAGTACCATCCAATGGAGCAAGCTGGTGGGGTAA

Translation (549 aa):
MSLVACECLPSPGLEPEPCSRARSQAHVYLEQIRNRVALGVPDMTKRDYLVDAATQIRLALERDVSEDYE
AAFNHYQNGVDVLLRGIHVDPNKERREAVKLKITKYLRRAEEIFNCHLQRPLSSGASPSAGFSSLRLRPI
RTLSSAVEQLRGCRVVGVIEKVQLVQDPATGGTFVVKSLPRCHMVSRERLTIIPHGVPYMTKLLRYFVSE
DSIFLHLEHVQGGTLWSHLLSQAHSRHSGLSSGSTQERMKAQLNPHLNLLTPARLPSGHAPGQDRIALEP
PRTSPNLLLAGEAPSTRPQREAEGEPTARTSTSGSSDLPKAPGGHLHLQARRAGQNSDAGPPRGLTWVPE
GAGPVLGGCGRGMDQSCLSADGAGRGCGRATWSVREEQVKQWAAEMLVALEALHEQGVLCRDLHPGNLLL
DQAGHIRLTYFGQWSEVEPQCCGEAVDNLYSAPEVGGISELTEACDWWSFGSLLYELLTGMALSQSHPSG
IQAHTQLQLPEWLSRPAASLLTELLQFEPTRRLGMGEGGVSKLKSHPFFSTIQWSKLVG


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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