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Conserved domains on  [gi|66360894|pdb|1YIT|L]
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Chain L, 50s Ribosomal Protein L15p

Protein Classification

uL15m family ribosomal protein( domain architecture ID 10467148)

uL15m family ribosomal protein associates with ribosomal RNA and is involved in ribosome assembly

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L27A pfam00828
Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ...
 47-142 1.79e-14

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.


:

Pssm-ID: 459951  Cd Length: 125  Bit Score: 66.01  E-value: 1.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1YIT_L         47 LGKSGFKRPQKVQEEAATIDVREIDENVTllaaddvAEVEDGGFRVDVRDVVE---EADDADYVKVLGAGQVRHELTLIA 123
Cdd:pfam00828  34 LPKRGFKHREYNIFRYAPVNLGKLQELID-------EGRLDEGKVIDLEALKEaglVKKKKDGVKLLGKGELTKKLTVKA 106

                          90
                  ....*....|....*....
1YIT_L        124 DDFSEGAREKVEGAGGSVE 142
Cdd:pfam00828 107 SAFSKSAIEKIEAAGGKVE 125
 
Name Accession Description Interval E-value
Ribosomal_L27A pfam00828
Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ...
 47-142 1.79e-14

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.


Pssm-ID: 459951  Cd Length: 125  Bit Score: 66.01  E-value: 1.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1YIT_L         47 LGKSGFKRPQKVQEEAATIDVREIDENVTllaaddvAEVEDGGFRVDVRDVVE---EADDADYVKVLGAGQVRHELTLIA 123
Cdd:pfam00828  34 LPKRGFKHREYNIFRYAPVNLGKLQELID-------EGRLDEGKVIDLEALKEaglVKKKKDGVKLLGKGELTKKLTVKA 106

                          90
                  ....*....|....*....
1YIT_L        124 DDFSEGAREKVEGAGGSVE 142
Cdd:pfam00828 107 SAFSKSAIEKIEAAGGKVE 125
RplO COG0200
Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 ...
 49-144 5.80e-09

Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439970  Cd Length: 148  Bit Score: 51.94  E-value: 5.80e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1YIT_L       49 KSGFKRPQKVqeEAATIdvreideNVtllaaDDVAEVEDGGFRVDVRDVVEE---ADDADYVKVLGAGQVRHELTLIADD 125
Cdd:COG0200  63 KRGFKNIFRK--EYAVV-------NL-----GDLNKLFEAGTEVTLEALKEAglvKKKKDGVKILGNGELTKKLTVKAHK 128

                        90
                ....*....|....*....
1YIT_L      126 FSEGAREKVEGAGGSVELT 144
Cdd:COG0200 129 FSKSAKEKIEAAGGKVEVI 147
PRK04005 PRK04005
50S ribosomal protein L18e; Provisional
 101-139 4.09e-07

50S ribosomal protein L18e; Provisional


Pssm-ID: 235196  Cd Length: 111  Bit Score: 46.00  E-value: 4.09e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
1YIT_L       101 ADDADYV----KVLGAGQVRHELTLIADDFSEGAREKVEGAGG 139
Cdd:PRK04005  47 AKEGDTVvvpgKVLGSGKLDHKVTVAALSFSETAKEKIEEAGG 89
rplO_bact TIGR01071
ribosomal protein L15, bacterial/organelle; [Protein synthesis, Ribosomal proteins: synthesis ...
 80-142 3.89e-05

ribosomal protein L15, bacterial/organelle; [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273428  Cd Length: 145  Bit Score: 41.54  E-value: 3.89e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
1YIT_L         80 DDVAEVEDGGFRVDVRDVVEE---ADDADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVE 142
Cdd:TIGR01071  80 GKLAKLFDNGEVVTLETLKEKgliTKKIKFVKVLGNGKLTKPLTVKAHRVSKSAKAAIEAAGGSVE 145
 
Name Accession Description Interval E-value
Ribosomal_L27A pfam00828
Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ...
 47-142 1.79e-14

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.


Pssm-ID: 459951  Cd Length: 125  Bit Score: 66.01  E-value: 1.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1YIT_L         47 LGKSGFKRPQKVQEEAATIDVREIDENVTllaaddvAEVEDGGFRVDVRDVVE---EADDADYVKVLGAGQVRHELTLIA 123
Cdd:pfam00828  34 LPKRGFKHREYNIFRYAPVNLGKLQELID-------EGRLDEGKVIDLEALKEaglVKKKKDGVKLLGKGELTKKLTVKA 106

                          90
                  ....*....|....*....
1YIT_L        124 DDFSEGAREKVEGAGGSVE 142
Cdd:pfam00828 107 SAFSKSAIEKIEAAGGKVE 125
RplO COG0200
Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 ...
 49-144 5.80e-09

Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439970  Cd Length: 148  Bit Score: 51.94  E-value: 5.80e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1YIT_L       49 KSGFKRPQKVqeEAATIdvreideNVtllaaDDVAEVEDGGFRVDVRDVVEE---ADDADYVKVLGAGQVRHELTLIADD 125
Cdd:COG0200  63 KRGFKNIFRK--EYAVV-------NL-----GDLNKLFEAGTEVTLEALKEAglvKKKKDGVKILGNGELTKKLTVKAHK 128

                        90
                ....*....|....*....
1YIT_L      126 FSEGAREKVEGAGGSVELT 144
Cdd:COG0200 129 FSKSAKEKIEAAGGKVEVI 147
RPL18A COG1727
Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 101-149 1.52e-07

Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L18E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441333  Cd Length: 114  Bit Score: 47.49  E-value: 1.52e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
1YIT_L      101 ADDADYV----KVLGAGQVRHELTLIADDFSEGAREKVEGAGGS-VELTDLGEE 149
Cdd:COG1727  51 AKEGDTVvvpgKVLGSGKLSKKVTVAAFSFSETAAEKIEEAGGEcLTIEELVKE 104
PRK04005 PRK04005
50S ribosomal protein L18e; Provisional
 101-139 4.09e-07

50S ribosomal protein L18e; Provisional


Pssm-ID: 235196  Cd Length: 111  Bit Score: 46.00  E-value: 4.09e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
1YIT_L       101 ADDADYV----KVLGAGQVRHELTLIADDFSEGAREKVEGAGG 139
Cdd:PRK04005  47 AKEGDTVvvpgKVLGSGKLDHKVTVAALSFSETAKEKIEEAGG 89
rplO_bact TIGR01071
ribosomal protein L15, bacterial/organelle; [Protein synthesis, Ribosomal proteins: synthesis ...
 80-142 3.89e-05

ribosomal protein L15, bacterial/organelle; [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273428  Cd Length: 145  Bit Score: 41.54  E-value: 3.89e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
1YIT_L         80 DDVAEVEDGGFRVDVRDVVEE---ADDADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVE 142
Cdd:TIGR01071  80 GKLAKLFDNGEVVTLETLKEKgliTKKIKFVKVLGNGKLTKPLTVKAHRVSKSAKAAIEAAGGSVE 145
PTZ00160 PTZ00160
60S ribosomal protein L27a; Provisional
 1-144 7.22e-03

60S ribosomal protein L27a; Provisional


Pssm-ID: 185489  Cd Length: 147  Bit Score: 35.00  E-value: 7.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1YIT_L         1 MTSKKK---RQRGSRTHGGG---SHKNRRGAGHRggrgdAGRDKHE---FHNHEP--LGKSGFKR--PQKVQEEAATIDV 67
Cdd:PTZ00160   1 MPTRFKkcrKMRGHVSHGYGrvgKHRKHPGGRGN-----AGGQHHHrinFDKYHPgyFGKVGMRHfhLKKNKYYCPTINV 75

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
1YIT_L        68 reiDENVTLLAADDVAEVEDGGFRVDVRDVVEeaddADYVKVLGAGQVRHELTLI-ADDFSEGAREKVEGAGGSVELT 144
Cdd:PTZ00160  76 ---DKLWSLVPEETRYKYAKKGDKAPVIDVTK----AGYFKVLGKGHLPKQPVIVkARYFSKKAEKKIKAVGGACVLT 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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