NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|313754444|pdb|3OJ3|P]
View 

Chain P, Tumor necrosis factor alpha-induced protein 3

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ZnF_A20 smart00259
A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger ...
 18-43 8.30e-05

A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.


:

Pssm-ID: 128555  Cd Length: 26  Bit Score: 34.87  E-value: 8.30e-05
                          10        20
                  ....*....|....*....|....*.
3OJ3_P         18 TSKCRKAGCVYFGTPENKGFCTLCFI 43
Cdd:smart00259  1 PIKCRRPGCGFFGNPATEGLCSKCFK 26
 
Name Accession Description Interval E-value
ZnF_A20 smart00259
A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger ...
 18-43 8.30e-05

A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.


Pssm-ID: 128555  Cd Length: 26  Bit Score: 34.87  E-value: 8.30e-05
                          10        20
                  ....*....|....*....|....*.
3OJ3_P         18 TSKCRKAGCVYFGTPENKGFCTLCFI 43
Cdd:smart00259  1 PIKCRRPGCGFFGNPATEGLCSKCFK 26
seleno_YedE TIGR04112
putative selenium metabolism protein, YedE family; For 79 of the first 80 reference genomes in ...
 27-44 4.74e-03

putative selenium metabolism protein, YedE family; For 79 of the first 80 reference genomes in which a member of this protein family, YedE, is found, a selenium utilization system is found, spread over a broad taxonomic range (Firmicutes, spirochetes, delta-proteobacteria, Fusobacteria, Bacteriodes, etc. This family is less widespread than YedF, also involved in selenium metabolism.


Pssm-ID: 274988  Cd Length: 337  Bit Score: 32.17  E-value: 4.74e-03
                          10
                  ....*....|....*...
3OJ3_P         27 VYFGTPENKGFCTLCFIE 44
Cdd:TIGR04112  17 VKLGNPGNMGFCIACFLR 34
 
Name Accession Description Interval E-value
ZnF_A20 smart00259
A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger ...
 18-43 8.30e-05

A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.


Pssm-ID: 128555  Cd Length: 26  Bit Score: 34.87  E-value: 8.30e-05
                          10        20
                  ....*....|....*....|....*.
3OJ3_P         18 TSKCRKAGCVYFGTPENKGFCTLCFI 43
Cdd:smart00259  1 PIKCRRPGCGFFGNPATEGLCSKCFK 26
seleno_YedE TIGR04112
putative selenium metabolism protein, YedE family; For 79 of the first 80 reference genomes in ...
 27-44 4.74e-03

putative selenium metabolism protein, YedE family; For 79 of the first 80 reference genomes in which a member of this protein family, YedE, is found, a selenium utilization system is found, spread over a broad taxonomic range (Firmicutes, spirochetes, delta-proteobacteria, Fusobacteria, Bacteriodes, etc. This family is less widespread than YedF, also involved in selenium metabolism.


Pssm-ID: 274988  Cd Length: 337  Bit Score: 32.17  E-value: 4.74e-03
                          10
                  ....*....|....*...
3OJ3_P         27 VYFGTPENKGFCTLCFIE 44
Cdd:TIGR04112  17 VKLGNPGNMGFCIACFLR 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH