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Conserved domains on  [gi|1938952389|pdb|5XTD|j]
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Chain j, NADH-ubiquinone oxidoreductase chain 3

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 3.72e-50

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 154.71  E-value: 3.72e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j         1 MNFALILMTNTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
5XTD_j        81 TTNLPLMVMSSLLLIIILALSLAYEWLQKGLDWAE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 3.72e-50

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 154.71  E-value: 3.72e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j         1 MNFALILMTNTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
5XTD_j        81 TTNLPLMVMSSLLLIIILALSLAYEWLQKGLDWAE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-69 7.84e-19

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 74.38  E-value: 7.84e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
5XTD_j         18 MIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEI 69
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEV 52
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-69 5.55e-14

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 62.83  E-value: 5.55e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
5XTD_j       12 LLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEI 69
Cdd:COG0838  17 GLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEV 74
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 3.72e-50

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 154.71  E-value: 3.72e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j         1 MNFALILMTNTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
5XTD_j        81 TTNLPLMVMSSLLLIIILALSLAYEWLQKGLDWAE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 6-115 3.09e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 106.93  E-value: 3.09e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j         6 ILMTNTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNLP 85
Cdd:MTH00136   7 ILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPL 86

                         90       100       110
                 ....*....|....*....|....*....|
5XTD_j        86 LMVMSSLLLIIILALSLAYEWLQKGLDWAE 115
Cdd:MTH00136  87 LTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 5-115 3.16e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 106.62  E-value: 3.16e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j         5 LILMTNTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNL 84
Cdd:MTH00069   4 LMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTP 83

                         90       100       110
                 ....*....|....*....|....*....|.
5XTD_j        85 PLMVMSSLLLIIILALSLAYEWLQKGLDWAE 115
Cdd:MTH00069  84 TNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-114 1.08e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 97.64  E-value: 1.08e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j         1 MNFALILMTNTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
5XTD_j        81 TTNLPLMVMSSLLLIIILALSLAYEWLQKGLDWA 114
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 2.62e-25

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 91.58  E-value: 2.62e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j         1 MNFALILMTNTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00042   2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
5XTD_j        81 TTNLPLMVMSSLLLIIILALSLAYEWLQKGLDWAE 115
Cdd:MTH00042  82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 2.62e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 76.43  E-value: 2.62e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j         1 MNFALILMTNTLLALLLMIITFWLPQLNGYM-EKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWAL 79
Cdd:MTH00148   2 LSILLSLLFALILSPVLLLLGLVLSKRSYSDrEKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....*.
5XTD_j        80 QTTNLPLMVMSSLLLIIILALSLAYEWLQKGLDWAE 115
Cdd:MTH00148  82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-113 3.13e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 76.09  E-value: 3.13e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j         1 MNFALILMT-NTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWAL 79
Cdd:MTH00203   1 MNLIMLFFLiALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
5XTD_j        80 QTTNLPLMVMssLLLIIILALSLAYEWLQKGLDW 113
Cdd:MTH00203  81 QLSSLSLLLA--FLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-69 7.84e-19

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 74.38  E-value: 7.84e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
5XTD_j         18 MIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEI 69
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEV 52
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-113 2.90e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 68.65  E-value: 2.90e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j         2 NFALILMTNTLLALLLMIITFWLPQLNGY-MEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMdREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
5XTD_j        81 TTNLPLMVMSSLLLIIILALSLAYEWLQKGLDW 113
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-115 6.54e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 67.71  E-value: 6.54e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j         1 MNFALILMTNTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00202   3 LILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLK 82

                         90       100       110
                 ....*....|....*....|....*....|....*
5XTD_j        81 TTNLPLMVMSSLLLIIILALSLAYEWLQKGLDWAE 115
Cdd:MTH00202  83 SSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-114 7.12e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 67.58  E-value: 7.12e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j         1 MNFALILMTNTLLALLLMIITFWL--PQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVlaARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
5XTD_j        79 LQTTNLPLMVMSSLLLIIILALSLAYEWLQKGLDWA 114
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-69 5.55e-14

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 62.83  E-value: 5.55e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
5XTD_j       12 LLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEI 69
Cdd:COG0838  17 GLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEV 74
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-113 2.18e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 61.26  E-value: 2.18e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j        32 EKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNLpLMVMSSLLLIIILALSLAYEWLQKGL 111
Cdd:MTH00055  37 EKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGL-FGFWVMYLFLIILTIGLIYEWVKGGL 115


                 ..
5XTD_j       112 DW 113
Cdd:MTH00055 116 EW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 3-69 5.38e-13

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 60.26  E-value: 5.38e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
5XTD_j         3 FALILMTNTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEI 69
Cdd:PRK06602  11 FLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEA 77
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-113 7.70e-12

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 57.38  E-value: 7.70e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j         1 MNFALILMTNTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYN 80

                         90       100       110
                 ....*....|....*....|....*....|...
5XTD_j        81 TTNlPLMVMSSLLLIIILALSLAYEWLQKGLDW 113
Cdd:MTH00018  81 QIA-PFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 32-113 3.16e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 53.40  E-value: 3.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XTD_j        32 EKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNLpLMVMSSLLLIIILALSLAYEWLQKGL 111
Cdd:MTH00030  42 EKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNL-FSFWIVYTFLIVLAIGLAYEWIKGGL 120


                 ..
5XTD_j       112 DW 113
Cdd:MTH00030 121 EW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 3-68 8.27e-05

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 38.81  E-value: 8.27e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
5XTD_j         3 FALILMTNTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLE 68
Cdd:CHL00022  10 FWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVE 75
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-69 1.01e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 36.03  E-value: 1.01e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
5XTD_j         1 MNFALILMTNTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEI 69
Cdd:MTH00092   2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEI 70
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
3-69 1.28e-03

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 35.80  E-value: 1.28e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
5XTD_j         3 FALILMTNTLLALLLMIITFW---LPQLNGYMEKSTPYECGFDPM-SPARVpfSMKFFLVAITFLLFDLEI 69
Cdd:PRK08489  14 FVLLVLTFVAFFLTTRLARFIsrkLAQKNTEKLKLAIYECGPEPVkQPNRI--SSHFYIMALLFILFDVEI 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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