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Conserved domains on  [gi|1827515521|pdb|6LFF|B]
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Chain B, DNA-binding protein SATB1

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CUT super family cl08348
CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in ...
 9-81 1.24e-19

CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein.


The actual alignment was detected with superfamily member pfam02376:

Pssm-ID: 460543  Cd Length: 78  Bit Score: 75.32  E-value: 1.24e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
6LFF_B         9 SSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKeedPKTASQSLLV--NLRAMQNFLQLPEAERDRIY 81
Cdd:pfam02376  7 TKDIADRIKEELKRHKISQAVFAEKVLNRSQGTLSDLLRK---PKPWEKLKSGgrTFIRMYNWLSLPEDERMEIL 78
 
Name Accession Description Interval E-value
CUT pfam02376
CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in ...
 9-81 1.24e-19

CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein.


Pssm-ID: 460543  Cd Length: 78  Bit Score: 75.32  E-value: 1.24e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
6LFF_B         9 SSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKeedPKTASQSLLV--NLRAMQNFLQLPEAERDRIY 81
Cdd:pfam02376  7 TKDIADRIKEELKRHKISQAVFAEKVLNRSQGTLSDLLRK---PKPWEKLKSGgrTFIRMYNWLSLPEDERMEIL 78
 
Name Accession Description Interval E-value
CUT pfam02376
CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in ...
 9-81 1.24e-19

CUT domain; The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein.


Pssm-ID: 460543  Cd Length: 78  Bit Score: 75.32  E-value: 1.24e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
6LFF_B         9 SSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKeedPKTASQSLLV--NLRAMQNFLQLPEAERDRIY 81
Cdd:pfam02376  7 TKDIADRIKEELKRHKISQAVFAEKVLNRSQGTLSDLLRK---PKPWEKLKSGgrTFIRMYNWLSLPEDERMEIL 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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