NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2234344769|pdb|7F25|A]
View 

Chain A, Single-stranded DNA-binding protein 1

Protein Classification

single stranded DNA-binding domain-containing protein( domain architecture ID 489)

single stranded DNA-binding domain-containing protein may bind preferentially to single-stranded DNA

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RPA_2b-aaRSs_OBF_like super family cl09930
Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with ...
 1-116 5.83e-83

Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.; This superfamily includes two oligonucleotide/oligosaccharide binding fold (OBF) domain families. One of these contains the OBF domains of the large (RPA1, 70kDa), middle (RPA2, RPA4, 32kDa) and small (RPA3, 14 kDa) subunits of human heterotrimeric Replication protein A (RPA), and similar domains. RPA is a nuclear single-strand (ss) DNA-binding protein involved in most aspects of DNA metabolism. This family includes the four OBF domains of RPA1 [DNA-binding domain (DBD)-A, DBD-B, DBD-C, and RPA1N], the OBF domain of RPA2 (RPA2 DBD-D), RPA3, and the OBF domain of RPA4. The major DNA binding activity of human RPA and Saccharomyces cerevisiae RPA appears to be associated with DBD-A and -B, of RPA1. RPA1 DBD-C shows only weak ssDNA-binding activity and is involved in trimerization. The other OBF domain family in this superfamily is the N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids to their cognate tRNAs during protein biosynthesis. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases.


The actual alignment was detected with superfamily member PRK09010:

Pssm-ID: 471953 [Multi-domain]  Cd Length: 177  Bit Score: 240.13  E-value: 5.83e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         1 MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI 80
Cdd:PRK09010   1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
7F25_A        81 EGQLRTRKWTDQSGQERYTTEInVPQIGGVMQMLGG 116
Cdd:PRK09010  81 EGQLRTRKWTDQSGQDRYTTEV-VVNVGGTMQMLGG 115
 
Name Accession Description Interval E-value
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 1-116 5.83e-83

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 240.13  E-value: 5.83e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         1 MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI 80
Cdd:PRK09010   1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
7F25_A        81 EGQLRTRKWTDQSGQERYTTEInVPQIGGVMQMLGG 116
Cdd:PRK09010  81 EGQLRTRKWTDQSGQDRYTTEV-VVNVGGTMQMLGG 115
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 3-116 9.19e-63

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 188.78  E-value: 9.19e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A          3 SRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQtGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEG 82
Cdd:TIGR00621   1 MRMVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQD-GEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEG 79

                          90       100       110
                  ....*....|....*....|....*....|....
7F25_A         83 QLRTRKWTDQSGQERYTTEINVpQIGGVMQMLGG 116
Cdd:TIGR00621  80 RLRTRKWEDQNGQKRSKTEIIA-DNVQLLDLLGA 112
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
6-116 8.46e-57

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 171.95  E-value: 8.46e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A        6 VNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDkQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLR 85
Cdd:COG0629   1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKD-QDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLR 79

                        90       100       110
                ....*....|....*....|....*....|.
7F25_A       86 TRKWTDQSGQERYTTEINVPQIggvmQMLGG 116
Cdd:COG0629  80 TRSWEDKDGQKRYTTEVVADEI----QFLGS 106
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 6-107 1.60e-48

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 150.46  E-value: 1.60e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A          6 VNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEmkEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLR 85
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRGEGD--EETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQ 78

                          90       100
                  ....*....|....*....|..
7F25_A         86 TRKWTDQSGQERYTTEINVPQI 107
Cdd:pfam00436  79 TRKYEDQEGQKRYVTEIVADEV 100
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 9-108 2.88e-43

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 136.97  E-value: 2.88e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A        9 VILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKqtGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLRTRK 88
Cdd:cd04496   1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDR--DEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRS 78

                        90       100
                ....*....|....*....|
7F25_A       89 WTDQSGQERYTTEINVPQIG 108
Cdd:cd04496  79 WEDKDGQKRYGTEVVADRIE 98
 
Name Accession Description Interval E-value
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 1-116 5.83e-83

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 240.13  E-value: 5.83e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         1 MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI 80
Cdd:PRK09010   1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
7F25_A        81 EGQLRTRKWTDQSGQERYTTEInVPQIGGVMQMLGG 116
Cdd:PRK09010  81 EGQLRTRKWTDQSGQDRYTTEV-VVNVGGTMQMLGG 115
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 1-116 1.33e-66

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 198.61  E-value: 1.33e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         1 MAsRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI 80
Cdd:PRK05733   1 MA-RGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYI 79

                         90       100       110
                 ....*....|....*....|....*....|....*.
7F25_A        81 EGQLRTRKWtDQSGQERYTTEInVPQIGGVMQMLGG 116
Cdd:PRK05733  80 EGKLQTREW-EKDGIKRYTTEI-VVDMQGTMQLLGG 113
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 1-115 2.83e-66

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 198.03  E-value: 2.83e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         1 MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI 80
Cdd:PRK13732   1 MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80

                         90       100       110
                 ....*....|....*....|....*....|....*
7F25_A        81 EGQLRTRKWTDqSGQERYTTEINVpQIGGVMQMLG 115
Cdd:PRK13732  81 EGQLRTRSWED-NGITRYVTEILV-KTTGTMQMLG 113
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 5-116 5.52e-63

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 189.41  E-value: 5.52e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         5 GVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQL 84
Cdd:PRK06863   3 GINKVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRL 82

                         90       100       110
                 ....*....|....*....|....*....|..
7F25_A        85 RTRKWTDQSGQERYTTEINvpqiGGVMQMLGG 116
Cdd:PRK06863  83 KTRKWQDQNGQDRYTTEIQ----GDVLQMLGG 110
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 3-116 9.19e-63

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 188.78  E-value: 9.19e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A          3 SRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQtGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEG 82
Cdd:TIGR00621   1 MRMVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQD-GEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEG 79

                          90       100       110
                  ....*....|....*....|....*....|....
7F25_A         83 QLRTRKWTDQSGQERYTTEINVpQIGGVMQMLGG 116
Cdd:TIGR00621  80 RLRTRKWEDQNGQKRSKTEIIA-DNVQLLDLLGA 112
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
 1-116 6.59e-59

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 179.60  E-value: 6.59e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         1 MASrgVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI 80
Cdd:PRK06958   1 MAS--VNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEFKEATEWHRVAFFGRLAEIVGEYLKKGSSVYI 78

                         90       100       110
                 ....*....|....*....|....*....|....*.
7F25_A        81 EGQLRTRKWTDQSGQERYTTEINVPQiggvMQMLGG 116
Cdd:PRK06958  79 EGRIRTRKWQGQDGQDRYSTEIVADQ----MQMLGG 110
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
6-116 8.46e-57

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 171.95  E-value: 8.46e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A        6 VNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDkQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLR 85
Cdd:COG0629   1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKD-QDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLR 79

                        90       100       110
                ....*....|....*....|....*....|.
7F25_A       86 TRKWTDQSGQERYTTEINVPQIggvmQMLGG 116
Cdd:COG0629  80 TRSWEDKDGQKRYTTEVVADEI----QFLGS 106
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 6-116 1.25e-50

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 158.04  E-value: 1.25e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         6 VNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGK-LAEVAGEYLRKGSQVYIEGQL 84
Cdd:PRK06341   5 VNKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHRVVIFNEgLCKVAEQYLKKGAKVYIEGQL 84

                         90       100       110
                 ....*....|....*....|....*....|..
7F25_A        85 RTRKWTDQSGQERYTTEINVPQIGGVMQMLGG 116
Cdd:PRK06341  85 QTRKWTDQSGVERYSTEVVLQGFNSTLTMLDG 116
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 6-107 1.60e-48

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 150.46  E-value: 1.60e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A          6 VNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEmkEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLR 85
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRGEGD--EETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQ 78

                          90       100
                  ....*....|....*....|..
7F25_A         86 TRKWTDQSGQERYTTEINVPQI 107
Cdd:pfam00436  79 TRKYEDQEGQKRYVTEIVADEV 100
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
 3-116 2.84e-46

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 147.01  E-value: 2.84e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         3 SRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQtGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEG 82
Cdd:PRK08763   2 ARGINKVILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDRE-GNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG 80

                         90       100       110
                 ....*....|....*....|....*....|....
7F25_A        83 QLRTRKWTDQSGQERYTTEInvpqIGGVMQMLGG 116
Cdd:PRK08763  81 SIRYDKFTGQDGQERYVTEI----VADEMQMLGG 110
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 6-102 2.52e-43

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 139.08  E-value: 2.52e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         6 VNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGK-LAEVAGEYLRKGSQVYIEGQL 84
Cdd:PRK06642   5 LNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIFSEgLVSVVERYVTKGSKLYIEGSL 84

                         90
                 ....*....|....*...
7F25_A        85 RTRKWTDQSGQERYTTEI 102
Cdd:PRK06642  85 QTRKWNDNSGQEKYTTEV 102
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 9-108 2.88e-43

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 136.97  E-value: 2.88e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A        9 VILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKqtGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLRTRK 88
Cdd:cd04496   1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDR--DEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRS 78

                        90       100
                ....*....|....*....|
7F25_A       89 WTDQSGQERYTTEINVPQIG 108
Cdd:cd04496  79 WEDKDGQKRYGTEVVADRIE 98
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
 7-115 5.83e-36

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 121.11  E-value: 5.83e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         7 NKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRdKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLRT 86
Cdd:PRK08486   3 NKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFK-KQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLTF 81

                         90       100
                 ....*....|....*....|....*....
7F25_A        87 RKWTDQSGQERYTTEINVPQiggvMQMLG 115
Cdd:PRK08486  82 ESWMDQNGQKRSKHTITAES----MQMLD 106
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 5-115 7.32e-26

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 93.60  E-value: 7.32e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         5 GVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDkqtgemkEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQL 84
Cdd:PRK07459   2 SLNSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRD-------DEPDWFNLEIWGKTAQVAADYVKKGSLIGITGSL 74

                         90       100       110
                 ....*....|....*....|....*....|..
7F25_A        85 RTRKWTD-QSGQERYTTEINVPQiggvMQMLG 115
Cdd:PRK07459  75 KFDRWTDrNTGEDRSKPVIRVDR----LELLG 102
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 6-102 4.72e-18

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 75.22  E-value: 4.72e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         6 VNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQtGEmkEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLR 85
Cdd:PRK06751   2 MNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQ-GE--READFINCVIWRKQAENVANYLKKGSLAGVDGRLQ 78

                         90
                 ....*....|....*..
7F25_A        86 TRKWTDQSGQERYTTEI 102
Cdd:PRK06751  79 TRNYEGQDGKRVYVTEV 95
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 7-102 1.16e-17

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 72.87  E-value: 1.16e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         7 NKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDkQTGEmkEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLRT 86
Cdd:PRK07274   3 NKVILIGRLTATPELVKTANDKSVARVTLAVNRRFKN-QNGE--READFINVVLWGKLAETLASYASKGSLISIDGELRT 79

                         90
                 ....*....|....*.
7F25_A        87 RKWtDQSGQERYTTEI 102
Cdd:PRK07274  80 RKY-EKDGQTHYVTEV 94
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 11-108 4.50e-17

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 72.76  E-value: 4.50e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A        11 LVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKE-QTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLRTRKW 89
Cdd:PRK07772   9 VVGNLTADPELRFTPSGAAVANFTVASTPRTFDRQTNEWKDgEALFLRCSIWRQAAENVAESLTKGMRVIVTGRLKQRSY 88

                         90
                 ....*....|....*....
7F25_A        90 TDQSGQERYTTEINVPQIG 108
Cdd:PRK07772  89 ETREGEKRTVVELEVDEIG 107
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 6-102 4.68e-17

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 72.23  E-value: 4.68e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         6 VNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDkQTGEmkEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLR 85
Cdd:PRK07275   2 INNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKS-QNGE--READFINCVIWRQQAENLANWAKKGALIGVTGRIQ 78

                         90
                 ....*....|....*..
7F25_A        86 TRKWTDQSGQERYTTEI 102
Cdd:PRK07275  79 TRNYENQQGQRVYVTEV 95
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 6-107 1.65e-14

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 64.29  E-value: 1.65e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         6 VNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDkQTGEmkEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLR 85
Cdd:PRK06752   2 MNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRN-SLGE--QQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIH 78

                         90       100
                 ....*....|....*....|..
7F25_A        86 TRKWTDQSGQERYTTEINVPQI 107
Cdd:PRK06752  79 TRNYEDDQGKRIYITEVVIESI 100
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
 9-107 1.65e-12

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 60.30  E-value: 1.65e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A         9 VILVGNLGQDPEVRYMPSGGAVANLTLATseswrdKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLRTRK 88
Cdd:PRK06293   4 GYIVGRLGADPEERMTSKGKRVVVLRLGV------KSRVGSKDETVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPES 77

                         90
                 ....*....|....*....
7F25_A        89 WTDQSGQERYTTEINVPQI 107
Cdd:PRK06293  78 YVDKDGSPQSSLVVSVDTI 96
PRK08182 PRK08182
single-stranded DNA-binding protein; Provisional
 13-108 1.18e-06

single-stranded DNA-binding protein; Provisional


Pssm-ID: 169261  Cd Length: 148  Bit Score: 44.67  E-value: 1.18e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7F25_A        13 GNLGQDPEVRYMPSGG----AVANLTLATSESWRDKQtGEMKEQTE-WHRVVMFGKLAEVAGEYLRKGSQVYIEGQLRTR 87
Cdd:PRK08182   9 GNIGSAPEYREFPNGNdeprRLLRLNVYFDNPVPTKD-GEYEDRGGfWAPVELWHRDAEHWARLYQKGMRVLVEGRMERD 87

                         90       100
                 ....*....|....*....|.
7F25_A        88 KWTDQSGQERYTTEINVPQIG 108
Cdd:PRK08182  88 EWTDNEDNERVTFKVEARRVG 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH