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Conserved domains on  [gi|2438256761|pdb|8FE4|B]
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Chain B, prM protein

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Flavi_propep pfam01570
Flavivirus polyprotein propeptide; The flaviviruses are small enveloped animal viruses ...
 6-81 1.21e-29

Flavivirus polyprotein propeptide; The flaviviruses are small enveloped animal viruses containing a single positive strand genomic RNA. The genome encodes one large ORF a polyprotein which undergos proteolytic processing into mature viral peptide chains. This family consists of a propeptide region of approximately 90 amino acid length.


:

Pssm-ID: 366710  Cd Length: 78  Bit Score: 100.27  E-value: 1.21e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
8FE4_B         6 RNGEPHMI-VSRQEKGKSLlfktEDGVNMCTLMAMDLGELCEDTITYKCP-LLRQNEPEDIDCWCNST-STWVTYGTCT 81
Cdd:pfam01570  1 RKNRWLLLnVTSEDLGKTF----SVGTGNCTTNILEAKYWCPDSMEYNCPnLSPREEPDDIDCWCYGVeNVRVAYGKCD 75
 
Name Accession Description Interval E-value
Flavi_propep pfam01570
Flavivirus polyprotein propeptide; The flaviviruses are small enveloped animal viruses ...
 6-81 1.21e-29

Flavivirus polyprotein propeptide; The flaviviruses are small enveloped animal viruses containing a single positive strand genomic RNA. The genome encodes one large ORF a polyprotein which undergos proteolytic processing into mature viral peptide chains. This family consists of a propeptide region of approximately 90 amino acid length.


Pssm-ID: 366710  Cd Length: 78  Bit Score: 100.27  E-value: 1.21e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
8FE4_B         6 RNGEPHMI-VSRQEKGKSLlfktEDGVNMCTLMAMDLGELCEDTITYKCP-LLRQNEPEDIDCWCNST-STWVTYGTCT 81
Cdd:pfam01570  1 RKNRWLLLnVTSEDLGKTF----SVGTGNCTTNILEAKYWCPDSMEYNCPnLSPREEPDDIDCWCYGVeNVRVAYGKCD 75
 
Name Accession Description Interval E-value
Flavi_propep pfam01570
Flavivirus polyprotein propeptide; The flaviviruses are small enveloped animal viruses ...
 6-81 1.21e-29

Flavivirus polyprotein propeptide; The flaviviruses are small enveloped animal viruses containing a single positive strand genomic RNA. The genome encodes one large ORF a polyprotein which undergos proteolytic processing into mature viral peptide chains. This family consists of a propeptide region of approximately 90 amino acid length.


Pssm-ID: 366710  Cd Length: 78  Bit Score: 100.27  E-value: 1.21e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
8FE4_B         6 RNGEPHMI-VSRQEKGKSLlfktEDGVNMCTLMAMDLGELCEDTITYKCP-LLRQNEPEDIDCWCNST-STWVTYGTCT 81
Cdd:pfam01570  1 RKNRWLLLnVTSEDLGKTF----SVGTGNCTTNILEAKYWCPDSMEYNCPnLSPREEPDDIDCWCYGVeNVRVAYGKCD 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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