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Bin3 protein, partial (plasmid) [Plasmid pI258]
helix-turn-helix domain-containing protein( domain architecture ID 10500321)
helix-turn-helix domain-containing protein such as the Hin-like recombinase unique to bacteria
List of domain hits
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Name | Accession | Description | Interval | E-value | ||
HTH_7 | pfam02796 | Helix-turn-helix domain of resolvase; |
17-69 | 4.36e-10 | ||
Helix-turn-helix domain of resolvase; : Pssm-ID: 397088 [Multi-domain] Cd Length: 45 Bit Score: 49.28 E-value: 4.36e-10
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Name | Accession | Description | Interval | E-value | ||
HTH_7 | pfam02796 | Helix-turn-helix domain of resolvase; |
17-69 | 4.36e-10 | ||
Helix-turn-helix domain of resolvase; Pssm-ID: 397088 [Multi-domain] Cd Length: 45 Bit Score: 49.28 E-value: 4.36e-10
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SpoIVCA | COG1961 | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE [Replication, recombination and ... |
1-65 | 1.00e-06 | ||
Site-specific DNA recombinase SpoIVCA/DNA invertase PinE [Replication, recombination and repair]; Pssm-ID: 441564 [Multi-domain] Cd Length: 388 Bit Score: 43.86 E-value: 1.00e-06
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HTH_Hin_like | cd00569 | Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of ... |
38-65 | 9.59e-05 | ||
Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain. Pssm-ID: 259851 [Multi-domain] Cd Length: 42 Bit Score: 35.76 E-value: 9.59e-05
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transpos_IS630 | NF033545 | IS630 family transposase; |
37-68 | 3.52e-03 | ||
IS630 family transposase; Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 33.77 E-value: 3.52e-03
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transpos_IS481 | NF033577 | IS481 family transposase; null |
42-66 | 7.74e-03 | ||
IS481 family transposase; null Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 32.95 E-value: 7.74e-03
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Name | Accession | Description | Interval | E-value | ||
HTH_7 | pfam02796 | Helix-turn-helix domain of resolvase; |
17-69 | 4.36e-10 | ||
Helix-turn-helix domain of resolvase; Pssm-ID: 397088 [Multi-domain] Cd Length: 45 Bit Score: 49.28 E-value: 4.36e-10
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SpoIVCA | COG1961 | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE [Replication, recombination and ... |
1-65 | 1.00e-06 | ||
Site-specific DNA recombinase SpoIVCA/DNA invertase PinE [Replication, recombination and repair]; Pssm-ID: 441564 [Multi-domain] Cd Length: 388 Bit Score: 43.86 E-value: 1.00e-06
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HTH_Hin_like | cd00569 | Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of ... |
38-65 | 9.59e-05 | ||
Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain. Pssm-ID: 259851 [Multi-domain] Cd Length: 42 Bit Score: 35.76 E-value: 9.59e-05
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HTH_23 | pfam13384 | Homeodomain-like domain; |
37-67 | 1.94e-04 | ||
Homeodomain-like domain; Pssm-ID: 433164 [Multi-domain] Cd Length: 50 Bit Score: 35.32 E-value: 1.94e-04
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Csa3 | COG3415 | CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ... |
37-67 | 1.61e-03 | ||
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system Pssm-ID: 442641 [Multi-domain] Cd Length: 325 Bit Score: 34.83 E-value: 1.61e-03
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transpos_IS630 | NF033545 | IS630 family transposase; |
37-68 | 3.52e-03 | ||
IS630 family transposase; Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 33.77 E-value: 3.52e-03
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transpos_IS481 | NF033577 | IS481 family transposase; null |
42-66 | 7.74e-03 | ||
IS481 family transposase; null Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 32.95 E-value: 7.74e-03
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Blast search parameters | ||||
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