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Conserved domains on  [gi|180884|gb|AAA73873|]
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alpha-1 type II collagen, partial [Homo sapiens]

Protein Classification

VWC domain-containing protein( domain architecture ID 10642013)

VWC domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VWC smart00214
von Willebrand factor (vWF) type C domain;
34-89 3.83e-14

von Willebrand factor (vWF) type C domain;


:

Pssm-ID: 214564  Cd Length: 59  Bit Score: 61.38  E-value: 3.83e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 180884       34 CVQDGQRYNDKDVWKPEPCRICVCDTG-TVLCDDIICEDVKDCLSPE--IPFGECCPIC 89
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQICTCLDGtTVLCDPVECPPPPDCPNPErvKPPGECCPRC 59
 
Name Accession Description Interval E-value
VWC smart00214
von Willebrand factor (vWF) type C domain;
34-89 3.83e-14

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 61.38  E-value: 3.83e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 180884       34 CVQDGQRYNDKDVWKPEPCRICVCDTG-TVLCDDIICEDVKDCLSPE--IPFGECCPIC 89
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQICTCLDGtTVLCDPVECPPPPDCPNPErvKPPGECCPRC 59
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 34-89 1.02e-13

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


Pssm-ID: 278520  Cd Length: 57  Bit Score: 60.13  E-value: 1.02e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 180884      34 CVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVkDCLSP--EIPFGECCPIC 89
Cdd:pfam00093   1 CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKIICPPL-DCPNPrlEIPPGECCPVC 57
 
Name Accession Description Interval E-value
VWC smart00214
von Willebrand factor (vWF) type C domain;
34-89 3.83e-14

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 61.38  E-value: 3.83e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 180884       34 CVQDGQRYNDKDVWKPEPCRICVCDTG-TVLCDDIICEDVKDCLSPE--IPFGECCPIC 89
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQICTCLDGtTVLCDPVECPPPPDCPNPErvKPPGECCPRC 59
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 34-89 1.02e-13

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


Pssm-ID: 278520  Cd Length: 57  Bit Score: 60.13  E-value: 1.02e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 180884      34 CVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVkDCLSP--EIPFGECCPIC 89
Cdd:pfam00093   1 CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKIICPPL-DCPNPrlEIPPGECCPVC 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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