unknown [Transposon Tn10]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
PRK15121 super family | cl33090 | MDR efflux pump AcrAB transcriptional activator RobA; |
27-132 | 5.88e-53 | |||
MDR efflux pump AcrAB transcriptional activator RobA; The actual alignment was detected with superfamily member PRK15121: Pssm-ID: 185076 [Multi-domain] Cd Length: 289 Bit Score: 168.65 E-value: 5.88e-53
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Name | Accession | Description | Interval | E-value | |||
PRK15121 | PRK15121 | MDR efflux pump AcrAB transcriptional activator RobA; |
27-132 | 5.88e-53 | |||
MDR efflux pump AcrAB transcriptional activator RobA; Pssm-ID: 185076 [Multi-domain] Cd Length: 289 Bit Score: 168.65 E-value: 5.88e-53
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HTH_ARAC | smart00342 | helix_turn_helix, arabinose operon control protein; |
47-127 | 2.42e-29 | |||
helix_turn_helix, arabinose operon control protein; Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 101.86 E-value: 2.42e-29
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AraC | COG2207 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
17-129 | 9.19e-23 | |||
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 89.84 E-value: 9.19e-23
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HTH_18 | pfam12833 | Helix-turn-helix domain; |
50-129 | 3.80e-20 | |||
Helix-turn-helix domain; Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 78.40 E-value: 3.80e-20
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Name | Accession | Description | Interval | E-value | |||
PRK15121 | PRK15121 | MDR efflux pump AcrAB transcriptional activator RobA; |
27-132 | 5.88e-53 | |||
MDR efflux pump AcrAB transcriptional activator RobA; Pssm-ID: 185076 [Multi-domain] Cd Length: 289 Bit Score: 168.65 E-value: 5.88e-53
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PRK10219 | PRK10219 | superoxide response transcriptional regulator SoxS; |
26-127 | 1.90e-33 | |||
superoxide response transcriptional regulator SoxS; Pssm-ID: 182314 [Multi-domain] Cd Length: 107 Bit Score: 113.10 E-value: 1.90e-33
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HTH_ARAC | smart00342 | helix_turn_helix, arabinose operon control protein; |
47-127 | 2.42e-29 | |||
helix_turn_helix, arabinose operon control protein; Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 101.86 E-value: 2.42e-29
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PRK11511 | PRK11511 | MDR efflux pump AcrAB transcriptional activator MarA; |
23-127 | 2.01e-27 | |||
MDR efflux pump AcrAB transcriptional activator MarA; Pssm-ID: 236920 [Multi-domain] Cd Length: 127 Bit Score: 98.64 E-value: 2.01e-27
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AraC | COG2207 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
17-129 | 9.19e-23 | |||
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 89.84 E-value: 9.19e-23
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GlxA | COG4977 | Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
23-128 | 1.09e-21 | |||
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 87.91 E-value: 1.09e-21
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HTH_18 | pfam12833 | Helix-turn-helix domain; |
50-129 | 3.80e-20 | |||
Helix-turn-helix domain; Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 78.40 E-value: 3.80e-20
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AdaA | COG2169 | Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
26-128 | 5.45e-19 | |||
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair]; Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 80.87 E-value: 5.45e-19
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PRK10371 | PRK10371 | transcriptional regulator MelR; |
30-128 | 7.03e-12 | |||
transcriptional regulator MelR; Pssm-ID: 182416 [Multi-domain] Cd Length: 302 Bit Score: 60.99 E-value: 7.03e-12
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ftrA | PRK09393 | transcriptional activator FtrA; Provisional |
36-129 | 5.01e-10 | |||
transcriptional activator FtrA; Provisional Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 55.74 E-value: 5.01e-10
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PRK09685 | PRK09685 | DNA-binding transcriptional activator FeaR; Provisional |
22-128 | 3.37e-09 | |||
DNA-binding transcriptional activator FeaR; Provisional Pssm-ID: 236612 [Multi-domain] Cd Length: 302 Bit Score: 53.50 E-value: 3.37e-09
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HTH_AraC | pfam00165 | Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
37-78 | 2.14e-06 | |||
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added. Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 41.76 E-value: 2.14e-06
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PRK13501 | PRK13501 | HTH-type transcriptional activator RhaR; |
61-128 | 4.87e-06 | |||
HTH-type transcriptional activator RhaR; Pssm-ID: 184092 [Multi-domain] Cd Length: 290 Bit Score: 44.51 E-value: 4.87e-06
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PRK15435 | PRK15435 | bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada; |
42-128 | 2.88e-05 | |||
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada; Pssm-ID: 185333 [Multi-domain] Cd Length: 353 Bit Score: 42.09 E-value: 2.88e-05
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HTH_AraC | pfam00165 | Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
92-128 | 1.09e-04 | |||
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added. Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 37.52 E-value: 1.09e-04
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PRK13502 | PRK13502 | HTH-type transcriptional activator RhaR; |
26-127 | 2.25e-04 | |||
HTH-type transcriptional activator RhaR; Pssm-ID: 184093 [Multi-domain] Cd Length: 282 Bit Score: 39.65 E-value: 2.25e-04
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PRK10572 | PRK10572 | arabinose operon transcriptional regulator AraC; |
30-128 | 8.76e-04 | |||
arabinose operon transcriptional regulator AraC; Pssm-ID: 236717 [Multi-domain] Cd Length: 290 Bit Score: 37.65 E-value: 8.76e-04
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PRK15185 | PRK15185 | transcriptional regulator HilD; Provisional |
47-126 | 2.40e-03 | |||
transcriptional regulator HilD; Provisional Pssm-ID: 185107 [Multi-domain] Cd Length: 309 Bit Score: 36.51 E-value: 2.40e-03
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Blast search parameters | ||||
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