NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|4249660|gb|AAD13757|]
View 

tubby like protein 1 [Mus musculus]

Protein Classification

tubby family protein( domain architecture ID 10471804)

tubby family protein plays an important role in maintenance and function of neuronal cells during post differentiation and development in mammals, and may participate in the abscisic acid (ABA) signaling pathway in plants

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Tub pfam01167
Tub family;
297-538 7.61e-131

Tub family;


:

Pssm-ID: 460094  Cd Length: 251  Bit Score: 381.15  E-value: 7.61e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4249660    297 LQPAPQGRAVRCRLTRDKKGMdrGMYPSYFLHLD---TEKKVFLLAGRKRKRSKTANYLISSDPTNLSRGGENFIGKLRS 373
Cdd:pfam01167   1 KQPGPRDGTIQCFIKRDKSGM--GLTPTYHLYLElspGDGGKFLLAARKRRRSTTSNYLISLDADDLSRGSNGYIGKLRS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4249660    374 NLLGNRFTVFDN-----GQNPQRGGGG----DVGSLRQELAAVVYETNVLGFRGPRRMTVIIPGMNSDNERVPIRPRNaS 444
Cdd:pfam01167  79 NFLGTKFTLYDNqppynGANPSKSRSSfgskKVSPGRYELAAVSYELNVLGTRGPRRMKVIIPSIPASGQQVPIQPQS-E 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4249660    445 DGLLVRWQNKTLESLIELHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLC 524
Cdd:pfam01167 158 SSLLEDFKSGRLDELLVLKNKPPRWNEQLQCYCLNFHGRVTVASVKNFQLVAPEDQDKVILQFGKVGKDMFTMDYRYPLS 237

                         250
                  ....*....|....
gi 4249660    525 ALQAFAIALSSFDG 538
Cdd:pfam01167 238 AFQAFAICLSSFDT 251
 
Name Accession Description Interval E-value
Tub pfam01167
Tub family;
297-538 7.61e-131

Tub family;


Pssm-ID: 460094  Cd Length: 251  Bit Score: 381.15  E-value: 7.61e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4249660    297 LQPAPQGRAVRCRLTRDKKGMdrGMYPSYFLHLD---TEKKVFLLAGRKRKRSKTANYLISSDPTNLSRGGENFIGKLRS 373
Cdd:pfam01167   1 KQPGPRDGTIQCFIKRDKSGM--GLTPTYHLYLElspGDGGKFLLAARKRRRSTTSNYLISLDADDLSRGSNGYIGKLRS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4249660    374 NLLGNRFTVFDN-----GQNPQRGGGG----DVGSLRQELAAVVYETNVLGFRGPRRMTVIIPGMNSDNERVPIRPRNaS 444
Cdd:pfam01167  79 NFLGTKFTLYDNqppynGANPSKSRSSfgskKVSPGRYELAAVSYELNVLGTRGPRRMKVIIPSIPASGQQVPIQPQS-E 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4249660    445 DGLLVRWQNKTLESLIELHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLC 524
Cdd:pfam01167 158 SSLLEDFKSGRLDELLVLKNKPPRWNEQLQCYCLNFHGRVTVASVKNFQLVAPEDQDKVILQFGKVGKDMFTMDYRYPLS 237

                         250
                  ....*....|....
gi 4249660    525 ALQAFAIALSSFDG 538
Cdd:pfam01167 238 AFQAFAICLSSFDT 251
 
Name Accession Description Interval E-value
Tub pfam01167
Tub family;
297-538 7.61e-131

Tub family;


Pssm-ID: 460094  Cd Length: 251  Bit Score: 381.15  E-value: 7.61e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4249660    297 LQPAPQGRAVRCRLTRDKKGMdrGMYPSYFLHLD---TEKKVFLLAGRKRKRSKTANYLISSDPTNLSRGGENFIGKLRS 373
Cdd:pfam01167   1 KQPGPRDGTIQCFIKRDKSGM--GLTPTYHLYLElspGDGGKFLLAARKRRRSTTSNYLISLDADDLSRGSNGYIGKLRS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4249660    374 NLLGNRFTVFDN-----GQNPQRGGGG----DVGSLRQELAAVVYETNVLGFRGPRRMTVIIPGMNSDNERVPIRPRNaS 444
Cdd:pfam01167  79 NFLGTKFTLYDNqppynGANPSKSRSSfgskKVSPGRYELAAVSYELNVLGTRGPRRMKVIIPSIPASGQQVPIQPQS-E 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4249660    445 DGLLVRWQNKTLESLIELHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLC 524
Cdd:pfam01167 158 SSLLEDFKSGRLDELLVLKNKPPRWNEQLQCYCLNFHGRVTVASVKNFQLVAPEDQDKVILQFGKVGKDMFTMDYRYPLS 237

                         250
                  ....*....|....
gi 4249660    525 ALQAFAIALSSFDG 538
Cdd:pfam01167 238 AFQAFAICLSSFDT 251
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH