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Conserved domains on  [gi|5058995|gb|AAD38867|]
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small cytokine B subfamily member 11 SCYB11 precursor [Homo sapiens]

Protein Classification

CXC family chemokine( domain architecture ID 10084510)

CXC family chemokine such as interleukin-8, also called C-X-C motif chemokine 8, that is a chemotactic factor that attracts neutrophils, basophils, and T-cells, but not monocytes, and is involved in neutrophil activation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Chemokine_CXC cd00273
Chemokine_CXC: 1 of 4 subgroup designations based on the arrangement of the two N-terminal ...
 28-90 1.90e-16

Chemokine_CXC: 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteine residues; includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; many members contain an RCxC motif which may be a general requirement for binding to CXC chemokine receptors; those with the ELR motif are chemotatic for neutrophils and have been shown to be angiogenic, while those without the motif act on T and B cells, and are typically angiostatic; exist as monomers and dimers, but are believed to be functional as monomers; found only in vertebrates and a few viruses. See CDs: Chemokine (cd00169) for the general alignment of chemokines, or Chemokine_CC (cd00272), Chemokine_C (cd00271), and Chemokine_CX3C (cd00274) for the additional chemokine subgroups.


:

Pssm-ID: 238171  Cd Length: 64  Bit Score: 66.90  E-value: 1.90e-16
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 5058995  28 GRCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKeNKGQRCLNPKSKQARLIIKKVE 90
Cdd:cd00273  2 LRCRCIKTTSGFVHPKSIKKLEVIPPGPHCPNTEIIATLK-NGRKVCLNPEAPWVQKIIKKLL 63
 
Name Accession Description Interval E-value
Chemokine_CXC cd00273
Chemokine_CXC: 1 of 4 subgroup designations based on the arrangement of the two N-terminal ...
 28-90 1.90e-16

Chemokine_CXC: 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteine residues; includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; many members contain an RCxC motif which may be a general requirement for binding to CXC chemokine receptors; those with the ELR motif are chemotatic for neutrophils and have been shown to be angiogenic, while those without the motif act on T and B cells, and are typically angiostatic; exist as monomers and dimers, but are believed to be functional as monomers; found only in vertebrates and a few viruses. See CDs: Chemokine (cd00169) for the general alignment of chemokines, or Chemokine_CC (cd00272), Chemokine_C (cd00271), and Chemokine_CX3C (cd00274) for the additional chemokine subgroups.


Pssm-ID: 238171  Cd Length: 64  Bit Score: 66.90  E-value: 1.90e-16
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 5058995  28 GRCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKeNKGQRCLNPKSKQARLIIKKVE 90
Cdd:cd00273  2 LRCRCIKTTSGFVHPKSIKKLEVIPPGPHCPNTEIIATLK-NGRKVCLNPEAPWVQKIIKKLL 63
SCY smart00199
Intercrine alpha family (small cytokine C-X-C) (chemokine CXC); Family of cytokines involved ...
 29-88 6.68e-08

Intercrine alpha family (small cytokine C-X-C) (chemokine CXC); Family of cytokines involved in cell-specific chemotaxis, mediation of cell growth, and the inflammatory response.


Pssm-ID: 197570  Cd Length: 59  Bit Score: 44.93  E-value: 6.68e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 5058995     29 RClCIGPGVKAVKVADIEkaSIMYPSNNCDKIEVIITLKENKgQRCLNPKSKQARLIIKK 88
Cdd:smart00199  3 RC-CLSYTSKKIPLKRIK--SYYPTSSHCPKPAVIFTTKKGR-KVCADPKAKWVQRYIKK 58
IL8 pfam00048
Small cytokines (intecrine/chemokine), interleukin-8 like; Includes a number of secreted ...
 29-88 3.96e-05

Small cytokines (intecrine/chemokine), interleukin-8 like; Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds.


Pssm-ID: 459650  Cd Length: 60  Bit Score: 38.02  E-value: 3.96e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 5058995    29 RClCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIiTLKENKGQRCLNPKSKQARLIIKK 88
Cdd:pfam00048  2 DC-CLRYSSKPIPLKRVKSYEIQPASSSCPKPAVI-FLTKKGRQVCADPKAKWVQRLIKK 59
 
Name Accession Description Interval E-value
Chemokine_CXC cd00273
Chemokine_CXC: 1 of 4 subgroup designations based on the arrangement of the two N-terminal ...
 28-90 1.90e-16

Chemokine_CXC: 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteine residues; includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; many members contain an RCxC motif which may be a general requirement for binding to CXC chemokine receptors; those with the ELR motif are chemotatic for neutrophils and have been shown to be angiogenic, while those without the motif act on T and B cells, and are typically angiostatic; exist as monomers and dimers, but are believed to be functional as monomers; found only in vertebrates and a few viruses. See CDs: Chemokine (cd00169) for the general alignment of chemokines, or Chemokine_CC (cd00272), Chemokine_C (cd00271), and Chemokine_CX3C (cd00274) for the additional chemokine subgroups.


Pssm-ID: 238171  Cd Length: 64  Bit Score: 66.90  E-value: 1.90e-16
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 5058995  28 GRCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKeNKGQRCLNPKSKQARLIIKKVE 90
Cdd:cd00273  2 LRCRCIKTTSGFVHPKSIKKLEVIPPGPHCPNTEIIATLK-NGRKVCLNPEAPWVQKIIKKLL 63
SCY smart00199
Intercrine alpha family (small cytokine C-X-C) (chemokine CXC); Family of cytokines involved ...
 29-88 6.68e-08

Intercrine alpha family (small cytokine C-X-C) (chemokine CXC); Family of cytokines involved in cell-specific chemotaxis, mediation of cell growth, and the inflammatory response.


Pssm-ID: 197570  Cd Length: 59  Bit Score: 44.93  E-value: 6.68e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 5058995     29 RClCIGPGVKAVKVADIEkaSIMYPSNNCDKIEVIITLKENKgQRCLNPKSKQARLIIKK 88
Cdd:smart00199  3 RC-CLSYTSKKIPLKRIK--SYYPTSSHCPKPAVIFTTKKGR-KVCADPKAKWVQRYIKK 58
IL8 pfam00048
Small cytokines (intecrine/chemokine), interleukin-8 like; Includes a number of secreted ...
 29-88 3.96e-05

Small cytokines (intecrine/chemokine), interleukin-8 like; Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds.


Pssm-ID: 459650  Cd Length: 60  Bit Score: 38.02  E-value: 3.96e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 5058995    29 RClCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIiTLKENKGQRCLNPKSKQARLIIKK 88
Cdd:pfam00048  2 DC-CLRYSSKPIPLKRVKSYEIQPASSSCPKPAVI-FLTKKGRQVCADPKAKWVQRLIKK 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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