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Gag [Ovis aries]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
Gag_p24 | pfam00607 | gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ... |
270-393 | 5.45e-47 | |||
gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. : Pssm-ID: 459864 Cd Length: 128 Bit Score: 161.29 E-value: 5.45e-47
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Gag_p10 | pfam02337 | Retroviral GAG p10 protein; This family consists of various retroviral GAG (core) polyproteins ... |
6-90 | 5.40e-43 | |||
Retroviral GAG p10 protein; This family consists of various retroviral GAG (core) polyproteins and encompasses the p10 region producing the p10 protein upon proteolytic cleavage of GAG by retroviral protease. The p10 or matrix protein (MA) is associated with the virus envelope glycoproteins in most mammalian retroviruses and may be involved in virus particle assembly, transport and budding. Some of the GAG polyproteins have alternate cleavage sites leading to the production of alternative and longer cleavage products (e.g. p19) the alignment of this family only covers the approximately N-terminal (GAG) 100 amino acid region of homology to p10. : Pssm-ID: 426727 Cd Length: 85 Bit Score: 149.03 E-value: 5.40e-43
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Gag_p24_C | pfam19317 | Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ... |
394-467 | 1.22e-35 | |||
Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. : Pssm-ID: 466038 Cd Length: 74 Bit Score: 128.37 E-value: 1.22e-35
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zf-CCHC_5 | pfam14787 | GAG-polyprotein viral zinc-finger; |
536-571 | 8.25e-17 | |||
GAG-polyprotein viral zinc-finger; : Pssm-ID: 373297 Cd Length: 36 Bit Score: 74.13 E-value: 8.25e-17
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PTZ00368 super family | cl31762 | universal minicircle sequence binding protein (UMSBP); Provisional |
508-553 | 5.71e-06 | |||
universal minicircle sequence binding protein (UMSBP); Provisional The actual alignment was detected with superfamily member PTZ00368: Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 46.34 E-value: 5.71e-06
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Name | Accession | Description | Interval | E-value | |||
Gag_p24 | pfam00607 | gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ... |
270-393 | 5.45e-47 | |||
gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. Pssm-ID: 459864 Cd Length: 128 Bit Score: 161.29 E-value: 5.45e-47
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Gag_p10 | pfam02337 | Retroviral GAG p10 protein; This family consists of various retroviral GAG (core) polyproteins ... |
6-90 | 5.40e-43 | |||
Retroviral GAG p10 protein; This family consists of various retroviral GAG (core) polyproteins and encompasses the p10 region producing the p10 protein upon proteolytic cleavage of GAG by retroviral protease. The p10 or matrix protein (MA) is associated with the virus envelope glycoproteins in most mammalian retroviruses and may be involved in virus particle assembly, transport and budding. Some of the GAG polyproteins have alternate cleavage sites leading to the production of alternative and longer cleavage products (e.g. p19) the alignment of this family only covers the approximately N-terminal (GAG) 100 amino acid region of homology to p10. Pssm-ID: 426727 Cd Length: 85 Bit Score: 149.03 E-value: 5.40e-43
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Gag_p24_C | pfam19317 | Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ... |
394-467 | 1.22e-35 | |||
Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. Pssm-ID: 466038 Cd Length: 74 Bit Score: 128.37 E-value: 1.22e-35
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zf-CCHC_5 | pfam14787 | GAG-polyprotein viral zinc-finger; |
536-571 | 8.25e-17 | |||
GAG-polyprotein viral zinc-finger; Pssm-ID: 373297 Cd Length: 36 Bit Score: 74.13 E-value: 8.25e-17
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PTZ00368 | PTZ00368 | universal minicircle sequence binding protein (UMSBP); Provisional |
508-553 | 5.71e-06 | |||
universal minicircle sequence binding protein (UMSBP); Provisional Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 46.34 E-value: 5.71e-06
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AIR1 | COG5082 | Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ... |
506-560 | 2.88e-04 | |||
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Pssm-ID: 227414 [Multi-domain] Cd Length: 190 Bit Score: 42.15 E-value: 2.88e-04
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ZnF_C2HC | smart00343 | zinc finger; |
512-528 | 4.03e-03 | |||
zinc finger; Pssm-ID: 197667 [Multi-domain] Cd Length: 17 Bit Score: 35.11 E-value: 4.03e-03
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Name | Accession | Description | Interval | E-value | |||
Gag_p24 | pfam00607 | gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ... |
270-393 | 5.45e-47 | |||
gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. Pssm-ID: 459864 Cd Length: 128 Bit Score: 161.29 E-value: 5.45e-47
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Gag_p10 | pfam02337 | Retroviral GAG p10 protein; This family consists of various retroviral GAG (core) polyproteins ... |
6-90 | 5.40e-43 | |||
Retroviral GAG p10 protein; This family consists of various retroviral GAG (core) polyproteins and encompasses the p10 region producing the p10 protein upon proteolytic cleavage of GAG by retroviral protease. The p10 or matrix protein (MA) is associated with the virus envelope glycoproteins in most mammalian retroviruses and may be involved in virus particle assembly, transport and budding. Some of the GAG polyproteins have alternate cleavage sites leading to the production of alternative and longer cleavage products (e.g. p19) the alignment of this family only covers the approximately N-terminal (GAG) 100 amino acid region of homology to p10. Pssm-ID: 426727 Cd Length: 85 Bit Score: 149.03 E-value: 5.40e-43
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Gag_p24_C | pfam19317 | Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ... |
394-467 | 1.22e-35 | |||
Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. Pssm-ID: 466038 Cd Length: 74 Bit Score: 128.37 E-value: 1.22e-35
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zf-CCHC_5 | pfam14787 | GAG-polyprotein viral zinc-finger; |
536-571 | 8.25e-17 | |||
GAG-polyprotein viral zinc-finger; Pssm-ID: 373297 Cd Length: 36 Bit Score: 74.13 E-value: 8.25e-17
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PTZ00368 | PTZ00368 | universal minicircle sequence binding protein (UMSBP); Provisional |
508-553 | 5.71e-06 | |||
universal minicircle sequence binding protein (UMSBP); Provisional Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 46.34 E-value: 5.71e-06
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PTZ00368 | PTZ00368 | universal minicircle sequence binding protein (UMSBP); Provisional |
506-583 | 4.28e-05 | |||
universal minicircle sequence binding protein (UMSBP); Provisional Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 44.03 E-value: 4.28e-05
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PTZ00368 | PTZ00368 | universal minicircle sequence binding protein (UMSBP); Provisional |
513-553 | 1.20e-04 | |||
universal minicircle sequence binding protein (UMSBP); Provisional Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 42.49 E-value: 1.20e-04
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PTZ00368 | PTZ00368 | universal minicircle sequence binding protein (UMSBP); Provisional |
513-553 | 2.21e-04 | |||
universal minicircle sequence binding protein (UMSBP); Provisional Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 41.72 E-value: 2.21e-04
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AIR1 | COG5082 | Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ... |
506-560 | 2.88e-04 | |||
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Pssm-ID: 227414 [Multi-domain] Cd Length: 190 Bit Score: 42.15 E-value: 2.88e-04
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ZnF_C2HC | smart00343 | zinc finger; |
512-528 | 4.03e-03 | |||
zinc finger; Pssm-ID: 197667 [Multi-domain] Cd Length: 17 Bit Score: 35.11 E-value: 4.03e-03
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Blast search parameters | ||||
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