NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|11095514|gb|AAG29886|]
View 

cytochrome b, partial (mitochondrion) [Eulemur flavifrons]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-60 5.31e-40

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 134.00  E-value: 5.31e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLFTV 60
Cdd:MTH00100  64 SSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTV 123
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-60 5.31e-40

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 134.00  E-value: 5.31e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLFTV 60
Cdd:MTH00100  64 SSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTV 123
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-60 1.58e-20

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 79.33  E-value: 1.58e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 11095514   1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSF--TLTETWNMGIILLFTV 60
Cdd:cd00284  56 SSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLT 117
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-60 2.21e-18

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 73.57  E-value: 2.21e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 11095514     1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSF--TLTETWNMGIILLFTV 60
Cdd:pfam00033  47 LSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFsyPRELTWVIGVILLVLT 108
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-44 5.05e-16

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 69.43  E-value: 5.05e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 11095514   2 SVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSF 44
Cdd:COG1290  74 SVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY 116
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-60 5.31e-40

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 134.00  E-value: 5.31e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLFTV 60
Cdd:MTH00100  64 SSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTV 123
CYTB MTH00119
cytochrome b; Provisional
 1-60 1.65e-33

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 116.92  E-value: 1.65e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLFTV 60
Cdd:MTH00119  65 SSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLL 124
CYTB MTH00074
cytochrome b; Provisional
 1-60 3.44e-33

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 115.93  E-value: 3.44e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLFTV 60
Cdd:MTH00074  65 SSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLV 124
CYTB MTH00131
cytochrome b; Provisional
 1-60 2.46e-32

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 113.59  E-value: 2.46e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLFTV 60
Cdd:MTH00131  64 SSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLV 123
CYTB MTH00156
cytochrome b; Provisional
 1-60 6.26e-32

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 112.18  E-value: 6.26e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLFTV 60
Cdd:MTH00156  54 SSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLV 113
CYTB MTH00191
cytochrome b; Provisional
 1-58 1.16e-30

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 108.85  E-value: 1.16e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLF 58
Cdd:MTH00191  61 SSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLI 118
CYTB MTH00016
cytochrome b; Validated
 1-58 5.21e-29

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 104.76  E-value: 5.21e-29
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLF 58
Cdd:MTH00016  65 SSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLL 122
CYTB MTH00145
cytochrome b; Provisional
 1-60 1.25e-28

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 103.83  E-value: 1.25e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLFTV 60
Cdd:MTH00145  65 SSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLS 124
CYTB MTH00034
cytochrome b; Validated
 1-58 1.99e-28

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 103.25  E-value: 1.99e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLF 58
Cdd:MTH00034  64 SSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFL 121
CYTB MTH00224
cytochrome b; Provisional
 1-57 4.21e-26

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 97.30  E-value: 4.21e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILL 57
Cdd:MTH00224  65 SSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILF 121
CYTB MTH00022
cytochrome b; Validated
 1-57 4.59e-24

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 91.69  E-value: 4.59e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILL 57
Cdd:MTH00022  63 ASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIF 119
CYTB MTH00053
cytochrome b; Provisional
 1-58 1.08e-23

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 90.54  E-value: 1.08e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLF 58
Cdd:MTH00053  65 SSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFL 122
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-60 1.58e-20

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 79.33  E-value: 1.58e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 11095514   1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSF--TLTETWNMGIILLFTV 60
Cdd:cd00284  56 SSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLT 117
CYTB MTH00033
cytochrome b; Provisional
 1-58 7.25e-20

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 80.37  E-value: 7.25e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLF 58
Cdd:MTH00033  61 SSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFF 118
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-60 2.21e-18

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 73.57  E-value: 2.21e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 11095514     1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSF--TLTETWNMGIILLFTV 60
Cdd:pfam00033  47 LSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFsyPRELTWVIGVILLVLT 108
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-44 5.05e-16

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 69.43  E-value: 5.05e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 11095514   2 SVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSF 44
Cdd:COG1290  74 SVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY 116
CYTB MTH00086
cytochrome b; Provisional
 1-60 7.12e-13

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 60.72  E-value: 7.12e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIILLFTV 60
Cdd:MTH00086  53 SSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLV 112
CYTB MTH00046
cytochrome b; Validated
 12-56 6.08e-10

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 52.29  E-value: 6.08e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 11095514   12 YGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNMGIIL 56
Cdd:MTH00046  66 FTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFIL 110
PRK03735 PRK03735
cytochrome b6; Provisional
 1-60 1.79e-07

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 45.09  E-value: 1.79e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTE--TWNMGIILLFTV 60
Cdd:PRK03735  75 ESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVT 136
petB CHL00070
cytochrome b6
 1-56 4.44e-07

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 43.94  E-value: 4.44e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 11095514    1 SSVAHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTE--TWNMGIIL 56
Cdd:CHL00070  67 ASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVL 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH