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Conserved domains on  [gi|11095520|gb|AAG29889|]
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cytochrome b, partial (mitochondrion) [Lemur catta]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-49 7.99e-28

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 101.25  E-value: 7.99e-28
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILLFT 49
Cdd:MTH00100  74 NYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFT 122
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-49 7.99e-28

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 101.25  E-value: 7.99e-28
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILLFT 49
Cdd:MTH00100  74 NYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFT 122
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-49 1.98e-13

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 60.46  E-value: 1.98e-13
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 11095520   1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSF--TLSEAWNIGIILLFT 49
Cdd:cd00284  66 NFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLL 116
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-49 1.24e-11

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 55.47  E-value: 1.24e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 11095520     1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSF--TLSEAWNIGIILLFT 49
Cdd:pfam00033  57 NFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFsyPRELTWVIGVILLVL 107
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-34 1.36e-09

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 50.56  E-value: 1.36e-09
                        10        20        30
                ....*....|....*....|....*....|....
gi 11095520   1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSF 34
Cdd:COG1290  83 PGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY 116
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-49 7.99e-28

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 101.25  E-value: 7.99e-28
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILLFT 49
Cdd:MTH00100  74 NYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFT 122
CYTB MTH00074
cytochrome b; Provisional
 1-48 1.27e-22

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 87.04  E-value: 1.27e-22
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILLF 48
Cdd:MTH00074  75 NYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLF 122
CYTB MTH00119
cytochrome b; Provisional
 1-49 1.49e-22

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 86.88  E-value: 1.49e-22
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILLFT 49
Cdd:MTH00119  75 QYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLL 123
CYTB MTH00131
cytochrome b; Provisional
 1-47 2.35e-21

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 83.55  E-value: 2.35e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILL 47
Cdd:MTH00131  74 NYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLL 120
CYTB MTH00156
cytochrome b; Provisional
 1-48 6.46e-21

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 82.14  E-value: 6.46e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILLF 48
Cdd:MTH00156  64 NYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILF 111
CYTB MTH00191
cytochrome b; Provisional
 1-48 1.32e-20

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 81.50  E-value: 1.32e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILLF 48
Cdd:MTH00191  71 NYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLI 118
CYTB MTH00016
cytochrome b; Validated
 1-48 1.91e-20

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 81.26  E-value: 1.91e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILLF 48
Cdd:MTH00016  75 NYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLL 122
CYTB MTH00145
cytochrome b; Provisional
 1-48 2.25e-20

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 81.10  E-value: 2.25e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILLF 48
Cdd:MTH00145  75 NYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLL 122
CYTB MTH00224
cytochrome b; Provisional
 1-47 2.32e-18

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 75.34  E-value: 2.32e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILL 47
Cdd:MTH00224  75 NYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILF 121
CYTB MTH00034
cytochrome b; Validated
 1-48 3.40e-18

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 75.13  E-value: 3.40e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILLF 48
Cdd:MTH00034  74 NYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFL 121
CYTB MTH00022
cytochrome b; Validated
 1-47 2.26e-16

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 69.73  E-value: 2.26e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILL 47
Cdd:MTH00022  73 NYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIF 119
CYTB MTH00053
cytochrome b; Provisional
 1-48 2.76e-16

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 69.73  E-value: 2.76e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILLF 48
Cdd:MTH00053  75 NYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFL 122
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-49 1.98e-13

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 60.46  E-value: 1.98e-13
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 11095520   1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSF--TLSEAWNIGIILLFT 49
Cdd:cd00284  66 NFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLL 116
CYTB MTH00033
cytochrome b; Provisional
 1-48 4.30e-13

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 60.72  E-value: 4.30e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILLF 48
Cdd:MTH00033  71 NYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFF 118
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-49 1.24e-11

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 55.47  E-value: 1.24e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 11095520     1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSF--TLSEAWNIGIILLFT 49
Cdd:pfam00033  57 NFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFsyPRELTWVIGVILLVL 107
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-34 1.36e-09

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 50.56  E-value: 1.36e-09
                        10        20        30
                ....*....|....*....|....*....|....
gi 11095520   1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSF 34
Cdd:COG1290  83 PGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY 116
CYTB MTH00086
cytochrome b; Provisional
 1-48 5.52e-09

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 49.17  E-value: 5.52e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 11095520    1 NYGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIILLF 48
Cdd:MTH00086  63 NFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYL 110
CYTB MTH00046
cytochrome b; Validated
 2-46 5.97e-09

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 48.83  E-value: 5.97e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 11095520    2 YGWVIRYLHANGASEFFLCRFIHIGRGLYYGSFTLSEAWNIGIIL 46
Cdd:MTH00046  66 FTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFIL 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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