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Conserved domains on  [gi|12056883|gb|AAG48106|]
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cytochrome b, partial (mitochondrion) [Cacatua ophthalmica]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-109 1.98e-84

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 250.20  E-value: 1.98e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00119  63 AFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFW 142

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00119 143 GATVITNLLSAIPYIGQTLVEWIWGGFSV 171
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-109 1.98e-84

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 250.20  E-value: 1.98e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00119  63 AFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFW 142

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00119 143 GATVITNLLSAIPYIGQTLVEWIWGGFSV 171
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-109 3.35e-50

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 157.53  E-value: 3.35e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883   1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSY--LYKETWNTGIILLLALMATAFVGYVLPWGQMS 78
Cdd:cd00284  54 AFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMS 133

                        90       100       110
                ....*....|....*....|....*....|.
gi 12056883  79 FWGATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:cd00284 134 YWGATVITNLFSAIPVIGITLVEWLWGGFSV 164
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-109 3.81e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 149.94  E-value: 3.81e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883   1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYlyKE----TWNTGIILLLALMATAFVGYVLPWGQ 76
Cdd:COG1290  71 AFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQ 148

                        90       100       110
                ....*....|....*....|....*....|...
gi 12056883  77 MSFWGATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:COG1290 149 LSYWGARVITGLFGAIPVIGTWLVTWLFGGEFP 181
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-109 6.31e-44

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 140.98  E-value: 6.31e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883     1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYG--SYLYKETWNTGIILLLALMATAFVGYVLPWGQMS 78
Cdd:pfam00033  45 AFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMS 124

                          90       100       110
                  ....*....|....*....|....*....|.
gi 12056883    79 FWGATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:pfam00033 125 YWGATVITNLLSAIPVIGDTLVEWIWGSFSV 155
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-109 1.98e-84

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 250.20  E-value: 1.98e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00119  63 AFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFW 142

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00119 143 GATVITNLLSAIPYIGQTLVEWIWGGFSV 171
CYTB MTH00131
cytochrome b; Provisional
 1-109 7.08e-76

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 228.38  E-value: 7.08e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00131  62 AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFW 141

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00131 142 GATVITNLLSAVPYVGNTLVQWIWGGFSV 170
CYTB MTH00100
cytochrome b; Provisional
 1-109 1.62e-74

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 224.90  E-value: 1.62e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00100  62 AFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFW 141

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00100 142 GATVITNLLSAIPYIGTTLVEWIWGGFSV 170
CYTB MTH00156
cytochrome b; Provisional
 1-109 8.79e-74

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 222.35  E-value: 8.79e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00156  52 AFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFW 131

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00156 132 GATVITNLLSAIPYLGTDLVQWIWGGFSV 160
CYTB MTH00074
cytochrome b; Provisional
 1-109 2.26e-73

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 222.25  E-value: 2.26e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00074  63 AFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFW 142

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00074 143 GATVITNLLSAIPYMGDTLVQWIWGGFSV 171
CYTB MTH00191
cytochrome b; Provisional
 1-109 4.60e-70

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 213.24  E-value: 4.60e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00191  59 AFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFW 138

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00191 139 GATVITNLLSAIPYIGDDLVQWLWGGFSV 167
CYTB MTH00145
cytochrome b; Provisional
 1-109 1.06e-66

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 205.14  E-value: 1.06e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00145  63 AFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFW 142

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00145 143 GATVITNLLSAIPYVGKMLVEWVWGGFSV 171
CYTB MTH00016
cytochrome b; Validated
 1-109 1.78e-64

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 199.13  E-value: 1.78e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00016  63 AFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFW 142

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00016 143 GATVITNLLSAIPYIGKMLVQWLWGGFSV 171
CYTB MTH00034
cytochrome b; Validated
 1-109 1.97e-62

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 194.15  E-value: 1.97e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00034  62 AFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFW 141

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00034 142 AATVITNLVSAVPYIGTDIVQWIWGGFSV 170
CYTB MTH00224
cytochrome b; Provisional
 1-109 9.25e-56

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 177.04  E-value: 9.25e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00224  63 AFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFW 142

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00224 143 GATVITNLFSAIPYIGKDLVEWIWGGFAV 171
CYTB MTH00022
cytochrome b; Validated
 1-109 2.39e-53

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 170.65  E-value: 2.39e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00022  61 AFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFW 140

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00022 141 GATVITNLLSAIPYVGTDIVQWVWGGFSV 169
CYTB MTH00053
cytochrome b; Provisional
 1-109 1.13e-51

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 166.42  E-value: 1.13e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00053  63 AFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFW 142

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00053 143 AATVITNLLSAIPYVGDDIVRWVWGGFSV 171
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-109 3.35e-50

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 157.53  E-value: 3.35e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883   1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSY--LYKETWNTGIILLLALMATAFVGYVLPWGQMS 78
Cdd:cd00284  54 AFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMS 133

                        90       100       110
                ....*....|....*....|....*....|.
gi 12056883  79 FWGATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:cd00284 134 YWGATVITNLFSAIPVIGITLVEWLWGGFSV 164
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-109 3.81e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 149.94  E-value: 3.81e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883   1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYlyKE----TWNTGIILLLALMATAFVGYVLPWGQ 76
Cdd:COG1290  71 AFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQ 148

                        90       100       110
                ....*....|....*....|....*....|...
gi 12056883  77 MSFWGATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:COG1290 149 LSYWGARVITGLFGAIPVIGTWLVTWLFGGEFP 181
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-109 6.31e-44

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 140.98  E-value: 6.31e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883     1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYG--SYLYKETWNTGIILLLALMATAFVGYVLPWGQMS 78
Cdd:pfam00033  45 AFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMS 124

                          90       100       110
                  ....*....|....*....|....*....|.
gi 12056883    79 FWGATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:pfam00033 125 YWGATVITNLLSAIPVIGDTLVEWIWGSFSV 155
CYTB MTH00033
cytochrome b; Provisional
 1-109 2.19e-41

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 140.07  E-value: 2.19e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00033  59 AFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFW 138

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00033 139 AATVITNLVSAIPSVGGSIVEWIWGGFSV 167
CYTB MTH00086
cytochrome b; Provisional
 1-109 3.47e-41

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 138.53  E-value: 3.47e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFW 80
Cdd:MTH00086  51 AFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFW 130

                         90       100
                 ....*....|....*....|....*....
gi 12056883   81 GATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:MTH00086 131 AAVVITSLLSVIPIWGPSIVMWIWGGFGV 159
CYTB MTH00046
cytochrome b; Validated
 14-109 4.84e-28

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 104.29  E-value: 4.84e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883   14 YGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIP 93
Cdd:MTH00046  66 FTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVP 145

                         90
                 ....*....|....*.
gi 12056883   94 YIGQTLVEWAWGGFSV 109
Cdd:MTH00046 146 IVGSLVYKYIVGGFSV 161
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
27-109 1.30e-22

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 86.14  E-value: 1.30e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    27 SFFFICIYLHIARGLYYGSYLYKE--TWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 104
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80


                  ....*
gi 12056883   105 GGFSV 109
Cdd:pfam13631  81 GGPFP 85
petB CHL00070
cytochrome b6
 1-109 5.25e-18

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 75.14  E-value: 5.25e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKE--TWNTGIILLLALMATAFVGYVLPWGQMS 78
Cdd:CHL00070  65 AFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIG 144

                         90       100       110
                 ....*....|....*....|....*....|.
gi 12056883   79 FWGATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:CHL00070 145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSV 175
PRK03735 PRK03735
cytochrome b6; Provisional
 1-109 9.04e-18

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 74.75  E-value: 9.04e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12056883    1 AFSSVANTCRNVQYGWLIRSLHANGASFFFICIYLHIARGLYYGSYLYKE--TWNTGIILLLALMATAFVGYVLPWGQMS 78
Cdd:PRK03735  73 AYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKA 152

                         90       100       110
                 ....*....|....*....|....*....|.
gi 12056883   79 FWGATVITNLFSAIPYIGQTLVEWAWGGFSV 109
Cdd:PRK03735 153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIV 183
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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