NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|13543811|gb|AAH06054|]
View 

E130012A19Rik protein, partial [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
EPOP super family cl24279
Elongin BC and Polycomb repressive complex 2-associated protein; This family of proteins is ...
253-318 1.25e-15

Elongin BC and Polycomb repressive complex 2-associated protein; This family of proteins is found in eukaryotes. Family members are approximately 835 amino acids in length and include the polycomb repressive complex 2-associated factor EPOP (Elongin BC and Polycomb Repressive Complex 2 (PRC2) Associated Protein, also termed C17orf96, esPRC2p48, E130012A19Rik), a scaffold protein expressed in the inner cell mass of the mouse blastocyst serving as a bridging partner between the PRC2/EED-EZH2 complex and the elongin BC complex, and fine-tuning the transcriptional status of Polycomb group (PcG) target genes in embryonic stem cells. Both EPOP and Elongin BC are required to maintain low levels of expression at PRC2 genomic targets. EPOP interacts with the H2B deubiquitinase USP7 to modulate transcriptional processes in mESCs similar to MYC. Functional studies found that the C-terminal region of EPOP directly interacts with PRC2 and that this region associates with the VEFS-box of the PRC2 core member SUZ12. Thus, suggesting that EPOP may directly affect PRC2 chromatin binding by altering the functionality of Suz12. This region is proposed to have evolved in early vertebrates and is also present in the paralog SKIDA1 (C10orf140) another novel PRC2-interacting protein, supporting the idea that proteins possessing this sequence are PRC2 regulators in the entire vertebrate branch. The family is found in association with pfam02437.


The actual alignment was detected with superfamily member pfam15223:

Pssm-ID: 434546  Cd Length: 426  Bit Score: 76.91  E-value: 1.25e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 13543811   253 PTLPTSSTFSLLDCFPCPPALVVEENGDLGPASSLRLQGDAKPP-PAHPLWKWQMGGPAVPEPPGLK 318
Cdd:pfam15223 356 VASPVKKPFNFMANFPSPPSLIIGNDGDLAPAYSLNSEKDPQPPhKSHPVWKWQLGGSAIPLPPSHK 422
 
Name Accession Description Interval E-value
EPOP pfam15223
Elongin BC and Polycomb repressive complex 2-associated protein; This family of proteins is ...
253-318 1.25e-15

Elongin BC and Polycomb repressive complex 2-associated protein; This family of proteins is found in eukaryotes. Family members are approximately 835 amino acids in length and include the polycomb repressive complex 2-associated factor EPOP (Elongin BC and Polycomb Repressive Complex 2 (PRC2) Associated Protein, also termed C17orf96, esPRC2p48, E130012A19Rik), a scaffold protein expressed in the inner cell mass of the mouse blastocyst serving as a bridging partner between the PRC2/EED-EZH2 complex and the elongin BC complex, and fine-tuning the transcriptional status of Polycomb group (PcG) target genes in embryonic stem cells. Both EPOP and Elongin BC are required to maintain low levels of expression at PRC2 genomic targets. EPOP interacts with the H2B deubiquitinase USP7 to modulate transcriptional processes in mESCs similar to MYC. Functional studies found that the C-terminal region of EPOP directly interacts with PRC2 and that this region associates with the VEFS-box of the PRC2 core member SUZ12. Thus, suggesting that EPOP may directly affect PRC2 chromatin binding by altering the functionality of Suz12. This region is proposed to have evolved in early vertebrates and is also present in the paralog SKIDA1 (C10orf140) another novel PRC2-interacting protein, supporting the idea that proteins possessing this sequence are PRC2 regulators in the entire vertebrate branch. The family is found in association with pfam02437.


Pssm-ID: 434546  Cd Length: 426  Bit Score: 76.91  E-value: 1.25e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 13543811   253 PTLPTSSTFSLLDCFPCPPALVVEENGDLGPASSLRLQGDAKPP-PAHPLWKWQMGGPAVPEPPGLK 318
Cdd:pfam15223 356 VASPVKKPFNFMANFPSPPSLIIGNDGDLAPAYSLNSEKDPQPPhKSHPVWKWQLGGSAIPLPPSHK 422
 
Name Accession Description Interval E-value
EPOP pfam15223
Elongin BC and Polycomb repressive complex 2-associated protein; This family of proteins is ...
253-318 1.25e-15

Elongin BC and Polycomb repressive complex 2-associated protein; This family of proteins is found in eukaryotes. Family members are approximately 835 amino acids in length and include the polycomb repressive complex 2-associated factor EPOP (Elongin BC and Polycomb Repressive Complex 2 (PRC2) Associated Protein, also termed C17orf96, esPRC2p48, E130012A19Rik), a scaffold protein expressed in the inner cell mass of the mouse blastocyst serving as a bridging partner between the PRC2/EED-EZH2 complex and the elongin BC complex, and fine-tuning the transcriptional status of Polycomb group (PcG) target genes in embryonic stem cells. Both EPOP and Elongin BC are required to maintain low levels of expression at PRC2 genomic targets. EPOP interacts with the H2B deubiquitinase USP7 to modulate transcriptional processes in mESCs similar to MYC. Functional studies found that the C-terminal region of EPOP directly interacts with PRC2 and that this region associates with the VEFS-box of the PRC2 core member SUZ12. Thus, suggesting that EPOP may directly affect PRC2 chromatin binding by altering the functionality of Suz12. This region is proposed to have evolved in early vertebrates and is also present in the paralog SKIDA1 (C10orf140) another novel PRC2-interacting protein, supporting the idea that proteins possessing this sequence are PRC2 regulators in the entire vertebrate branch. The family is found in association with pfam02437.


Pssm-ID: 434546  Cd Length: 426  Bit Score: 76.91  E-value: 1.25e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 13543811   253 PTLPTSSTFSLLDCFPCPPALVVEENGDLGPASSLRLQGDAKPP-PAHPLWKWQMGGPAVPEPPGLK 318
Cdd:pfam15223 356 VASPVKKPFNFMANFPSPPSLIIGNDGDLAPAYSLNSEKDPQPPhKSHPVWKWQLGGSAIPLPPSHK 422
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH