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Conserved domains on  [gi|55991496|gb|AAH86662|]
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FAD-dependent oxidoreductase domain containing 2 [Mus musculus]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 1000380)

NAD(P)/FAD-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

CATH:  3.50.50.60
EC:  1.-.-.-
Gene Ontology:  GO:0016491
SCOP:  4000117

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CzcO super family cl34398
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 18-236 4.21e-28

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


The actual alignment was detected with superfamily member COG2072:

Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 117.27  E-value: 4.21e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  18 SRPHRDYCVLGAGPAGLQMAAFLHRAGRDYEVFERESAPGS--FFTRYPrhrklisinkrhtgkanaefnlrhdwnSLLS 95
Cdd:COG2072   3 ATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGGtwRDNRYP---------------------------GLRL 55

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  96 DDPHLLFRhYS-------QAYFPDASDMVRYLGDFARRLGL--HVLYNTNITHVTLDKDPQAWnghyfILTDQKGQVYQC 166
Cdd:COG2072  56 DTPSHLYS-LPffpnwsdDPDFPTGDEILAYLEAYADKFGLrrPIRFGTEVTSARWDEADGRW-----TVTTDDGETLTA 129

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 55991496 167 SVLLVATG-LAVPKLVDFPGseyVEGYESVSV------DPEDFVGQNVLILGHGNSAFETAENILGVTNFVHMLSRS 236
Cdd:COG2072 130 RFVVVATGpLSRPKIPDIPG---LEDFAGEQLhsadwrNPVDLAGKRVLVVGTGASAVQIAPELARVAAHVTVFQRT 203
 
Name Accession Description Interval E-value
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 18-236 4.21e-28

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 117.27  E-value: 4.21e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  18 SRPHRDYCVLGAGPAGLQMAAFLHRAGRDYEVFERESAPGS--FFTRYPrhrklisinkrhtgkanaefnlrhdwnSLLS 95
Cdd:COG2072   3 ATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGGtwRDNRYP---------------------------GLRL 55

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  96 DDPHLLFRhYS-------QAYFPDASDMVRYLGDFARRLGL--HVLYNTNITHVTLDKDPQAWnghyfILTDQKGQVYQC 166
Cdd:COG2072  56 DTPSHLYS-LPffpnwsdDPDFPTGDEILAYLEAYADKFGLrrPIRFGTEVTSARWDEADGRW-----TVTTDDGETLTA 129

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 55991496 167 SVLLVATG-LAVPKLVDFPGseyVEGYESVSV------DPEDFVGQNVLILGHGNSAFETAENILGVTNFVHMLSRS 236
Cdd:COG2072 130 RFVVVATGpLSRPKIPDIPG---LEDFAGEQLhsadwrNPVDLAGKRVLVVGTGASAVQIAPELARVAAHVTVFQRT 203
Pyr_redox_3 pfam13738
Pyridine nucleotide-disulphide oxidoreductase;
31-311 8.49e-22

Pyridine nucleotide-disulphide oxidoreductase;


Pssm-ID: 404603 [Multi-domain]  Cd Length: 296  Bit Score: 96.14  E-value: 8.49e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496    31 PAGLQMAAFLHRAGR-DYEVFEReSAPGSFFTRYPRHRKLISINKRHTGKANAEFNLRHDWNSllsddPHLLFrhysQAY 109
Cdd:pfam13738   1 PAGIGCAIALKKAGLeDYLILEK-GNIGNSFYRYPTHMTFFSPSFTSNGFGIPDLNAISPGTS-----PAFTF----NRE 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496   110 FPDASDMVRYLGDFARRLGLHVLYNTNITHVTLDKDpqawnghYFILTDQKGqVYQCSVLLVATG-LAVPKLVDFPgsEY 188
Cdd:pfam13738  71 HPSGNEYAEYLRRVADHFELPINLFEEVTSVKKEDD-------GFVVTTSKG-TYQARYVIIATGeFDFPNKLGVP--EL 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496   189 VEGYESVSvDPEDFVGQNVLILGHGNSAFETAENILGVTNFVHMLSRSRVRLSWATHYVGDVR---------AINNGLLD 259
Cdd:pfam13738 141 PKHYSYVK-DFHPYAGQKVVVIGGYNSAVDAALELVRKGARVTVLYRGSEWEDRDSDPSYSLSpdtlnrleeLVKNGKIK 219

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 55991496   260 TYQLKSLDGLLESDLEYlaLVKDSKGK-------------FHVTLKFLLENNSSQSADSIPL--PED 311
Cdd:pfam13738 220 AHFNAEVKEITEVDVSY--KVHTEDGRkvtsnddpilatgYHPDLSFLKKGLFELDEDGRPVltEET 284
PRK13984 PRK13984
putative oxidoreductase; Provisional
 26-67 1.37e-04

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 45.14  E-value: 1.37e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 55991496   26 VLGAGPAGLQMAAFLHRAGRDYEVFERESAPGSFFtRY--PRHR 67
Cdd:PRK13984 288 IVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVM-RYgiPSYR 330
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 23-203 3.88e-03

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 39.61  E-value: 3.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496    23 DYCVLGAGPAGLQMAAFLHRAGRDYEVFERESAPgsfftRY--------PRHRK-------LISINKRHTgkanaefnLR 87
Cdd:TIGR02032   2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP-----RYkpcggalsPRALEeldlpgeLIVNLVRGA--------RF 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496    88 HDWNSllsdDPHLLFRHYSQAYFPDASDMVRYLGDFARRLGLHVLYNTNITHVTLDKDPQAWnghyfILTDQKGQVYqCS 167
Cdd:TIGR02032  69 FSPNG----DSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTRVLDVEIHDDRVVV-----IVRGSEGTVT-AK 138

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 55991496   168 VLLVATGL--AVPKLVDFP------GSEYVEGYESVSVDP-EDFV 203
Cdd:TIGR02032 139 IVIGADGSrsIVAKKLGLKkepreyGVAARAEVEMPDEEVdEDFV 183
 
Name Accession Description Interval E-value
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 18-236 4.21e-28

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 117.27  E-value: 4.21e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  18 SRPHRDYCVLGAGPAGLQMAAFLHRAGRDYEVFERESAPGS--FFTRYPrhrklisinkrhtgkanaefnlrhdwnSLLS 95
Cdd:COG2072   3 ATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGGtwRDNRYP---------------------------GLRL 55

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  96 DDPHLLFRhYS-------QAYFPDASDMVRYLGDFARRLGL--HVLYNTNITHVTLDKDPQAWnghyfILTDQKGQVYQC 166
Cdd:COG2072  56 DTPSHLYS-LPffpnwsdDPDFPTGDEILAYLEAYADKFGLrrPIRFGTEVTSARWDEADGRW-----TVTTDDGETLTA 129

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 55991496 167 SVLLVATG-LAVPKLVDFPGseyVEGYESVSV------DPEDFVGQNVLILGHGNSAFETAENILGVTNFVHMLSRS 236
Cdd:COG2072 130 RFVVVATGpLSRPKIPDIPG---LEDFAGEQLhsadwrNPVDLAGKRVLVVGTGASAVQIAPELARVAAHVTVFQRT 203
Pyr_redox_3 pfam13738
Pyridine nucleotide-disulphide oxidoreductase;
31-311 8.49e-22

Pyridine nucleotide-disulphide oxidoreductase;


Pssm-ID: 404603 [Multi-domain]  Cd Length: 296  Bit Score: 96.14  E-value: 8.49e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496    31 PAGLQMAAFLHRAGR-DYEVFEReSAPGSFFTRYPRHRKLISINKRHTGKANAEFNLRHDWNSllsddPHLLFrhysQAY 109
Cdd:pfam13738   1 PAGIGCAIALKKAGLeDYLILEK-GNIGNSFYRYPTHMTFFSPSFTSNGFGIPDLNAISPGTS-----PAFTF----NRE 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496   110 FPDASDMVRYLGDFARRLGLHVLYNTNITHVTLDKDpqawnghYFILTDQKGqVYQCSVLLVATG-LAVPKLVDFPgsEY 188
Cdd:pfam13738  71 HPSGNEYAEYLRRVADHFELPINLFEEVTSVKKEDD-------GFVVTTSKG-TYQARYVIIATGeFDFPNKLGVP--EL 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496   189 VEGYESVSvDPEDFVGQNVLILGHGNSAFETAENILGVTNFVHMLSRSRVRLSWATHYVGDVR---------AINNGLLD 259
Cdd:pfam13738 141 PKHYSYVK-DFHPYAGQKVVVIGGYNSAVDAALELVRKGARVTVLYRGSEWEDRDSDPSYSLSpdtlnrleeLVKNGKIK 219

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 55991496   260 TYQLKSLDGLLESDLEYlaLVKDSKGK-------------FHVTLKFLLENNSSQSADSIPL--PED 311
Cdd:pfam13738 220 AHFNAEVKEITEVDVSY--KVHTEDGRkvtsnddpilatgYHPDLSFLKKGLFELDEDGRPVltEET 284
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
26-255 3.92e-14

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 73.62  E-value: 3.92e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  26 VLGAGPAGLQMAAFLHRAGRDYEVFEReSAPGSFFTRYPRhrklisInkrhtgkanaefnlrHDWNSllsddphllfrhy 105
Cdd:COG0492   5 IIGAGPAGLTAAIYAARAGLKTLVIEG-GEPGGQLATTKE------I---------------ENYPG------------- 49

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496 106 sqayFPD---ASDMVRYLGDFARRLGLHVLYnTNITHVTLDKDPqawnghyFILTDQKGQVYQCSVLLVATGlAVPKLVD 182
Cdd:COG0492  50 ----FPEgisGPELAERLREQAERFGAEILL-EEVTSVDKDDGP-------FRVTTDDGTEYEAKAVIIATG-AGPRKLG 116

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 55991496 183 FPGSEYVEGYeSVS----VDPEDFVGQNVLILGHGNSAFETAENILGVTNFVHMLSRsRVRLSWATHYVGDVRAINN 255
Cdd:COG0492 117 LPGEEEFEGR-GVSycatCDGFFFRGKDVVVVGGGDSALEEALYLTKFASKVTLIHR-RDELRASKILVERLRANPK 191
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
26-180 9.61e-11

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 64.30  E-value: 9.61e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  26 VLGAGPAGLqMAA-FLHRAGRDYEVFERESAPGsfftryprhRK-LISINKR----HTGkANAEFnLRHdwnslLSDDPH 99
Cdd:COG2081   2 VIGAGAAGL-MAAiTAAERGARVLLLEKNPKVG---------RKiLISGGGRcnftNSE-PLPEF-LNY-----YGGNPH 64

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496 100 LL---FRHYSQA--------------------YFPD---ASDMVRYLGDFARRLGLHVLYNTNITHVTLDKDPqawnghy 153
Cdd:COG2081  65 FLksaLSRFTPEdliaffeglgietkeessgrVFPDsskASDILRALLAELREAGVEIRLRTRVTGIEKEDGG------- 137

                       170       180
                ....*....|....*....|....*...
gi 55991496 154 FILTDQKGQVYQCSVLLVATG-LAVPKL 180
Cdd:COG2081 138 FGVETPDGETVRADAVVLATGgLSYPKL 165
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
29-174 3.23e-06

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 49.20  E-value: 3.23e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  29 AGPAGLQMAAFLHRAGRDYEVFERESAPGS-----FFTryPRHRKLISINKRHTGKANAEFNLRHDWnslLSDDPHLLFR 103
Cdd:COG0644   1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDkicggGLL--PRALEELEPLGLDEPLERPVRGARFYS---PGGKSVELPP 75

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 55991496 104 HYSQAYFPDASDMVRYLGDFARRLGLHVLYNTNITHVTLDkdpqawNGHYFILTDQkGQVYQCSVLLVATG 174
Cdd:COG0644  76 GRGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRD------DGRVVVRTGD-GEEIRADYVVDADG 139
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 21-70 3.33e-06

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 49.83  E-value: 3.33e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 55991496  21 HRDYCVLGAGPAGLqMAAF-LHRAGRDYEVFERESAPG------------------SFFTRYPRHRKLI 70
Cdd:COG1232   1 MKRVAVIGGGIAGL-TAAYrLAKAGHEVTVLEASDRVGglirtvevdgfridrgphSFLTRDPEVLELL 68
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
21-222 8.13e-06

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 48.36  E-value: 8.13e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  21 HRDYCVLGAGPAGLQMAAFLHRAGRDYEVFERESA-------------PGSFFTRYPRHRKL----------------IS 71
Cdd:COG0665   2 TADVVVIGGGIAGLSTAYHLARRGLDVTVLERGRPgsgasgrnagqlrPGLAALADRALVRLarealdlwrelaaelgID 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  72 INKRHTG--------------KANAEFNLRHDWNS-LLSDD------PHLLFRHYSQA-YFPDA-----SDMVRYLGDFA 124
Cdd:COG0665  82 CDFRRTGvlylarteaelaalRAEAEALRALGLPVeLLDAAelrerePGLGSPDYAGGlYDPDDghvdpAKLVRALARAA 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496 125 RRLGLHVLYNTNITHVTLDkdpqawNGHYFILTDQKGQVyQCSVLLVATGLAVPKLVDFPGSE---YVEGYESVSVDPED 201
Cdd:COG0665 162 RAAGVRIREGTPVTGLERE------GGRVTGVRTERGTV-RADAVVLAAGAWSARLLPMLGLRlplRPVRGYVLVTEPLP 234

                       250       260
                ....*....|....*....|.
gi 55991496 202 FVGQNVLILGHGNSAFETAEN 222
Cdd:COG0665 235 DLPLRPVLDDTGVYLRPTADG 255
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 20-188 4.98e-05

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 45.70  E-value: 4.98e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  20 PHRDYCVLGAGPAGLQMAAFLHRAGRDYEVFERESAPGsfftRYPR-----------------HRKLISINKRHTGkanA 82
Cdd:COG0654   2 MRTDVLIVGGGPAGLALALALARAGIRVTVVERAPPPR----PDGRgialsprslellrrlglWDRLLARGAPIRG---I 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  83 EFNLRHDWNSLLSDDPHLlfRHYSQAYFPDASDMVRYLGDFARRLGLHVLYNTNITHVTLDKDpqawnGHYFILTDqkGQ 162
Cdd:COG0654  75 RVRDGSDGRVLARFDAAE--TGLPAGLVVPRADLERALLEAARALGVELRFGTEVTGLEQDAD-----GVTVTLAD--GR 145

                       170       180
                ....*....|....*....|....*...
gi 55991496 163 VYQCSVLLVATGL--AVPKLVDFPGSEY 188
Cdd:COG0654 146 TLRADLVVGADGArsAVRRLLGIGFTGR 173
PRK13984 PRK13984
putative oxidoreductase; Provisional
 26-67 1.37e-04

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 45.14  E-value: 1.37e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 55991496   26 VLGAGPAGLQMAAFLHRAGRDYEVFERESAPGSFFtRY--PRHR 67
Cdd:PRK13984 288 IVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVM-RYgiPSYR 330
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
26-57 2.51e-04

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 39.82  E-value: 2.51e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 55991496    26 VLGAGPAGLQMAAFLHRAGRDYEVFERESAPG 57
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLG 32
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 26-235 5.93e-04

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 42.81  E-value: 5.93e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  26 VLGAGPAGLQMAAFLHRAGRDYEVFERESAPGSFFtRY--PRHRklisinkrhtgkanaefnlrhdwnslLSDDpHLLFR 103
Cdd:COG0493 126 VVGSGPAGLAAAYQLARAGHEVTVFEALDKPGGLL-RYgiPEFR--------------------------LPKD-VLDRE 177

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496 104 hysqayfpdasdmVRYLgdfaRRLGLHVLYNTNI-THVTLDKdpqawnghyfiLTDQkgqvYQcSVLLvATGLAVPKLVD 182
Cdd:COG0493 178 -------------IELI----EALGVEFRTNVEVgKDITLDE-----------LLEE----FD-AVFL-ATGAGKPRDLG 223

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 55991496 183 FPGS---------EYVEGY-ESVSVDPEDFVGQNVLILGHGNSAFE---TAeNILGVTNfVHMLSR 235
Cdd:COG0493 224 IPGEdlkgvhsamDFLTAVnLGEAPDTILAVGKRVVVIGGGNTAMDcarTA-LRLGAES-VTIVYR 287
PRK12814 PRK12814
putative NADPH-dependent glutamate synthase small subunit; Provisional
 26-67 6.42e-04

putative NADPH-dependent glutamate synthase small subunit; Provisional


Pssm-ID: 139246 [Multi-domain]  Cd Length: 652  Bit Score: 42.79  E-value: 6.42e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 55991496   26 VLGAGPAGLQMAAFLHRAGRDYEVFERESAPGSFFtRY--PRHR 67
Cdd:PRK12814 198 IIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMM-RYgiPRFR 240
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 26-216 7.67e-04

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 42.47  E-value: 7.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496   26 VLGAGPAGLQMAAFLHRAGRDYEVFERESAPGSFFtRYprhrkliSInkrhtgkanAEFNLrhdwnsllsddphllfrhy 105
Cdd:PRK11749 145 VIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL-RY-------GI---------PEFRL------------------- 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496  106 sqayfPDasDMVRYLGDFARRLGLHVLYNTNI-THVTLDKdpqawnghyfiLTDQkgqvYQcSVLLvATGLAVPKLVDFP 184
Cdd:PRK11749 189 -----PK--DIVDREVERLLKLGVEIRTNTEVgRDITLDE-----------LRAG----YD-AVFI-GTGAGLPRFLGIP 244

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 55991496  185 GS---------EYVEGYESVSVDPEDFVGQNVLILGHGNSA 216
Cdd:PRK11749 245 GEnlggvysavDFLTRVNQAVADYDLPVGKRVVVIGGGNTA 285
gltD PRK12810
glutamate synthase subunit beta; Reviewed
 26-57 9.36e-04

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 42.07  E-value: 9.36e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 55991496   26 VLGAGPAGLQMAAFLHRAGRDYEVFERESAPG 57
Cdd:PRK12810 148 VVGSGPAGLAAADQLARAGHKVTVFERADRIG 179
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 21-57 3.46e-03

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 40.22  E-value: 3.46e-03
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 55991496  21 HRDYCVLGAGPAGLQMAAFLHRAGRDYEVFERESAPG 57
Cdd:COG1233   3 MYDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPG 39
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 23-203 3.88e-03

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 39.61  E-value: 3.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496    23 DYCVLGAGPAGLQMAAFLHRAGRDYEVFERESAPgsfftRY--------PRHRK-------LISINKRHTgkanaefnLR 87
Cdd:TIGR02032   2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP-----RYkpcggalsPRALEeldlpgeLIVNLVRGA--------RF 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55991496    88 HDWNSllsdDPHLLFRHYSQAYFPDASDMVRYLGDFARRLGLHVLYNTNITHVTLDKDPQAWnghyfILTDQKGQVYqCS 167
Cdd:TIGR02032  69 FSPNG----DSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTRVLDVEIHDDRVVV-----IVRGSEGTVT-AK 138

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 55991496   168 VLLVATGL--AVPKLVDFP------GSEYVEGYESVSVDP-EDFV 203
Cdd:TIGR02032 139 IVIGADGSrsIVAKKLGLKkepreyGVAARAEVEMPDEEVdEDFV 183
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
19-51 7.69e-03

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 39.13  E-value: 7.69e-03
                        10        20        30
                ....*....|....*....|....*....|....
gi 55991496  19 RPHRDYCVLGAGPAGLqMAAF-LHRAGRDYEVFE 51
Cdd:COG1231   5 ARGKDVVIVGAGLAGL-AAAReLRKAGLDVTVLE 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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