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pol polyprotein, partial [Mus cervicolor popaeus endogenous virus]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
MLVIN_C super family | cl40013 | Murine leukemia virus (MLV) integrase (IN) C-terminal domain; This is the C-terminal domain ... |
109-191 | 5.49e-37 | |||
Murine leukemia virus (MLV) integrase (IN) C-terminal domain; This is the C-terminal domain (CTD) which can be found in murine leukemia virus (MLV) integrase (IN) proteins. The MLV IN C-terminal domain interacts with the bromo and extraterminal (BET) proteins through the ET domain. This interaction provides a structural basis for global in vivo integration-site preferences andt disruption of this interaction through truncation mutations affects the global targeting profile of MLV. The CTD consists an SH3 fold followed by a long unstructured tail. The actual alignment was detected with superfamily member pfam18697: Pssm-ID: 436671 Cd Length: 83 Bit Score: 123.40 E-value: 5.49e-37
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Name | Accession | Description | Interval | E-value | |||
MLVIN_C | pfam18697 | Murine leukemia virus (MLV) integrase (IN) C-terminal domain; This is the C-terminal domain ... |
109-191 | 5.49e-37 | |||
Murine leukemia virus (MLV) integrase (IN) C-terminal domain; This is the C-terminal domain (CTD) which can be found in murine leukemia virus (MLV) integrase (IN) proteins. The MLV IN C-terminal domain interacts with the bromo and extraterminal (BET) proteins through the ET domain. This interaction provides a structural basis for global in vivo integration-site preferences andt disruption of this interaction through truncation mutations affects the global targeting profile of MLV. The CTD consists an SH3 fold followed by a long unstructured tail. Pssm-ID: 436671 Cd Length: 83 Bit Score: 123.40 E-value: 5.49e-37
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Name | Accession | Description | Interval | E-value | |||
MLVIN_C | pfam18697 | Murine leukemia virus (MLV) integrase (IN) C-terminal domain; This is the C-terminal domain ... |
109-191 | 5.49e-37 | |||
Murine leukemia virus (MLV) integrase (IN) C-terminal domain; This is the C-terminal domain (CTD) which can be found in murine leukemia virus (MLV) integrase (IN) proteins. The MLV IN C-terminal domain interacts with the bromo and extraterminal (BET) proteins through the ET domain. This interaction provides a structural basis for global in vivo integration-site preferences andt disruption of this interaction through truncation mutations affects the global targeting profile of MLV. The CTD consists an SH3 fold followed by a long unstructured tail. Pssm-ID: 436671 Cd Length: 83 Bit Score: 123.40 E-value: 5.49e-37
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Blast search parameters | ||||
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