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Conserved domains on  [gi|37731361|gb|AAN75246|]
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cytochrome b, partial (mitochondrion) [Melanoplus spretus]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 1-85 4.25e-58

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 181.13  E-value: 4.25e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00156  68 LLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLG 147


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00156 148 TDLVQ 152
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-85 4.25e-58

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 181.13  E-value: 4.25e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00156  68 LLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLG 147


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00156 148 TDLVQ 152
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-85 8.15e-34

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 119.12  E-value: 8.15e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361   1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:COG1290  87 LIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPV 166


                ....*..
gi 37731361  79 LGTDLVQ 85
Cdd:COG1290 167 IGTWLVT 173
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-84 1.07e-32

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 111.69  E-value: 1.07e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361   1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:cd00284  70 LIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPV 149


                ....*.
gi 37731361  79 LGTDLV 84
Cdd:cd00284 150 IGITLV 155
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-85 2.57e-30

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 105.54  E-value: 2.57e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361     1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:pfam00033  61 LIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPV 140


                  ....*..
gi 37731361    79 LGTDLVQ 85
Cdd:pfam00033 141 IGDTLVE 147
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-85 4.25e-58

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 181.13  E-value: 4.25e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00156  68 LLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLG 147


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00156 148 TDLVQ 152
CYTB MTH00100
cytochrome b; Provisional
 1-85 4.75e-54

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 171.36  E-value: 4.75e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00100  78 IIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 157


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00100 158 TTLVE 162
CYTB MTH00119
cytochrome b; Provisional
 1-85 5.53e-54

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 171.24  E-value: 5.53e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00119  79 LIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG 158


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00119 159 QTLVE 163
CYTB MTH00074
cytochrome b; Provisional
 1-85 3.06e-52

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 166.78  E-value: 3.06e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00074  79 LMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMG 158


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00074 159 DTLVQ 163
CYTB MTH00145
cytochrome b; Provisional
 1-84 2.26e-51

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 164.69  E-value: 2.26e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00145  79 LLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVG 158


                 ....
gi 37731361   81 TDLV 84
Cdd:MTH00145 159 KMLV 162
CYTB MTH00191
cytochrome b; Provisional
 1-85 2.53e-51

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 163.93  E-value: 2.53e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00191  75 LLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIG 154


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00191 155 DDLVQ 159
CYTB MTH00131
cytochrome b; Provisional
 1-85 2.68e-50

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 161.74  E-value: 2.68e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00131  78 LIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVG 157


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00131 158 NTLVQ 162
CYTB MTH00016
cytochrome b; Validated
 1-85 3.89e-48

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 155.99  E-value: 3.89e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00016  79 LLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIG 158


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00016 159 KMLVQ 163
CYTB MTH00034
cytochrome b; Validated
 1-85 4.15e-45

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 148.32  E-value: 4.15e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00034  78 LLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIG 157


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00034 158 TDIVQ 162
CYTB MTH00022
cytochrome b; Validated
 1-85 1.11e-42

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 142.15  E-value: 1.11e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00022  77 LLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVG 156


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00022 157 TDIVQ 161
CYTB MTH00224
cytochrome b; Provisional
 1-85 5.01e-40

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 135.05  E-value: 5.01e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00224  79 LLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIG 158


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00224 159 KDLVE 163
CYTB MTH00053
cytochrome b; Provisional
 1-85 4.01e-38

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 130.21  E-value: 4.01e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00053  79 ILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVG 158


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00053 159 DDIVR 163
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-85 8.15e-34

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 119.12  E-value: 8.15e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361   1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:COG1290  87 LIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPV 166


                ....*..
gi 37731361  79 LGTDLVQ 85
Cdd:COG1290 167 IGTWLVT 173
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-84 1.07e-32

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 111.69  E-value: 1.07e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361   1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:cd00284  70 LIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPV 149


                ....*.
gi 37731361  79 LGTDLV 84
Cdd:cd00284 150 IGITLV 155
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-85 2.57e-30

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 105.54  E-value: 2.57e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361     1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:pfam00033  61 LIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPV 140


                  ....*..
gi 37731361    79 LGTDLVQ 85
Cdd:pfam00033 141 IGDTLVE 147
CYTB MTH00033
cytochrome b; Provisional
 1-85 5.75e-30

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 108.87  E-value: 5.75e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00033  75 ILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVG 154


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00033 155 GSIVE 159
CYTB MTH00086
cytochrome b; Provisional
 1-85 1.04e-29

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 107.33  E-value: 1.04e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00086  67 LFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWG 146


                 ....*
gi 37731361   81 TDLVQ 85
Cdd:MTH00086 147 PSIVM 151
CYTB MTH00046
cytochrome b; Validated
 1-83 2.95e-20

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 82.34  E-value: 2.95e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00046  69 CVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVG 148


                 ...
gi 37731361   81 TDL 83
Cdd:MTH00046 149 SLV 151
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
11-85 5.03e-20

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 78.44  E-value: 5.03e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 37731361    11 SMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQ 85
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVW 77
PRK03735 PRK03735
cytochrome b6; Provisional
 1-85 2.83e-12

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 59.34  E-value: 2.83e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:PRK03735  89 IVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPV 168


                 ....*..
gi 37731361   79 LGTDLVQ 85
Cdd:PRK03735 169 IGDFIKT 175
petB CHL00070
cytochrome b6
 1-85 2.19e-08

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 48.56  E-value: 2.19e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361    1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:CHL00070  81 LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPV 160


                 ....*..
gi 37731361   79 LGTDLVQ 85
Cdd:CHL00070 161 IGSPLVE 167
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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