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Conserved domains on  [gi|37731387|gb|AAN75259|]
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cytochrome oxidase subunit II, partial (mitochondrion) [Melanoplus spretus]

Protein Classification

cytochrome c oxidase subunit II( domain architecture ID 999987)

cytochrome c oxidase subunit II, part of the functional core of the enzyme, transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit I

CATH:  1.10.287.90
EC:  7.1.1.9
Gene Ontology:  GO:0004129|GO:0005507
PubMed:  6307356|8083153
TCDB:  3.D.4.6.2

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
COX2 super family cl33359
cytochrome c oxidase subunit II; Provisional
 2-84 2.07e-43

cytochrome c oxidase subunit II; Provisional


The actual alignment was detected with superfamily member MTH00154:

Pssm-ID: 214438 [Multi-domain]  Cd Length: 227  Bit Score: 139.96  E-value: 2.07e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMN 81
Cdd:MTH00154  68 LPAIILIFIALPSLRLLYLLDEVNNPSITLKTIGHQWYWSYEYSDFKNIEFDSYMIPTNELENNGFRLLDVDNRLVLPMN 147


                 ...
gi 37731387   82 TEV 84
Cdd:MTH00154 148 TQI 150
 
Name Accession Description Interval E-value
COX2 MTH00154
cytochrome c oxidase subunit II; Provisional
 2-84 2.07e-43

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 214438 [Multi-domain]  Cd Length: 227  Bit Score: 139.96  E-value: 2.07e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMN 81
Cdd:MTH00154  68 LPAIILIFIALPSLRLLYLLDEVNNPSITLKTIGHQWYWSYEYSDFKNIEFDSYMIPTNELENNGFRLLDVDNRLVLPMN 147


                 ...
gi 37731387   82 TEV 84
Cdd:MTH00154 148 TQI 150
CcO_II_C cd13912
C-terminal domain of Cytochrome c Oxidase subunit II; Cytochrome c Oxidase (CcO), the terminal ...
 29-84 2.01e-32

C-terminal domain of Cytochrome c Oxidase subunit II; Cytochrome c Oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit II contains a copper-copper binuclear site called CuA, which is believed to be involved in electron transfer from cytochrome c to the binuclear center (active site) in subunit I.


Pssm-ID: 259979 [Multi-domain]  Cd Length: 130  Bit Score: 108.81  E-value: 2.01e-32
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 37731387  29 ITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMNTEV 84
Cdd:cd13912   3 LTIKAIGHQWYWSYEYSDFNDLEFDSYMIPEDDLEKGQLRLLEVDNRLVVPVNTHI 58
COX2 pfam00116
Cytochrome C oxidase subunit II, periplasmic domain;
29-84 6.88e-30

Cytochrome C oxidase subunit II, periplasmic domain;


Pssm-ID: 395066 [Multi-domain]  Cd Length: 120  Bit Score: 102.10  E-value: 6.88e-30
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 37731387    29 ITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMNTEV 84
Cdd:pfam00116   1 LTIKAIGHQWYWSYEYTDFGDLEFDSYMIPTEDLEEGQLRLLEVDNRVVLPVETHI 56
CyoA COG1622
Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];
1-46 2.58e-05

Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];


Pssm-ID: 441229 [Multi-domain]  Cd Length: 229  Bit Score: 40.20  E-value: 2.58e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 37731387   1 ALPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSD 46
Cdd:COG1622  85 VIPIIIVIVLAVPTLRVLHALDDAPEDPLTVEVTGYQWKWLFRYPD 130
CoxB TIGR02866
cytochrome c oxidase, subunit II; Cytochrome c oxidase is the terminal electron acceptor of ...
 29-46 4.16e-03

cytochrome c oxidase, subunit II; Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions. [Energy metabolism, Electron transport]


Pssm-ID: 274329 [Multi-domain]  Cd Length: 199  Bit Score: 33.89  E-value: 4.16e-03
                          10
                  ....*....|....*...
gi 37731387    29 ITIKTIGRQWYWSYEYSD 46
Cdd:TIGR02866  91 LKVKVTGYQWWWDFEYPE 108
 
Name Accession Description Interval E-value
COX2 MTH00154
cytochrome c oxidase subunit II; Provisional
 2-84 2.07e-43

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 214438 [Multi-domain]  Cd Length: 227  Bit Score: 139.96  E-value: 2.07e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMN 81
Cdd:MTH00154  68 LPAIILIFIALPSLRLLYLLDEVNNPSITLKTIGHQWYWSYEYSDFKNIEFDSYMIPTNELENNGFRLLDVDNRLVLPMN 147


                 ...
gi 37731387   82 TEV 84
Cdd:MTH00154 148 TQI 150
COX2 MTH00117
cytochrome c oxidase subunit II; Provisional
 1-82 2.06e-33

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 177178 [Multi-domain]  Cd Length: 227  Bit Score: 114.24  E-value: 2.06e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    1 ALPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPM 80
Cdd:MTH00117  67 ILPAIVLILLALPSLRILYLMDEINNPHLTIKAIGHQWYWSYEYTDYKDLSFDSYMIPTQDLPNGHFRLLEVDHRMVIPM 146


                 ..
gi 37731387   81 NT 82
Cdd:MTH00117 147 ES 148
CcO_II_C cd13912
C-terminal domain of Cytochrome c Oxidase subunit II; Cytochrome c Oxidase (CcO), the terminal ...
 29-84 2.01e-32

C-terminal domain of Cytochrome c Oxidase subunit II; Cytochrome c Oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit II contains a copper-copper binuclear site called CuA, which is believed to be involved in electron transfer from cytochrome c to the binuclear center (active site) in subunit I.


Pssm-ID: 259979 [Multi-domain]  Cd Length: 130  Bit Score: 108.81  E-value: 2.01e-32
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 37731387  29 ITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMNTEV 84
Cdd:cd13912   3 LTIKAIGHQWYWSYEYSDFNDLEFDSYMIPEDDLEKGQLRLLEVDNRLVVPVNTHI 58
COX2 MTH00140
cytochrome c oxidase subunit II; Provisional
 2-84 1.44e-31

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 214430 [Multi-domain]  Cd Length: 228  Bit Score: 109.64  E-value: 1.44e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMN 81
Cdd:MTH00140  68 VPALILVFLALPSLRLLYLLDETNNPLLTVKAIGHQWYWSYEYSDFSVIEFDSYMVPENELELGDFRLLEVDNRLVLPYS 147


                 ...
gi 37731387   82 TEV 84
Cdd:MTH00140 148 VDT 150
COX2 MTH00139
cytochrome c oxidase subunit II; Provisional
 2-84 1.50e-30

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 214429 [Multi-domain]  Cd Length: 226  Bit Score: 107.11  E-value: 1.50e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMN 81
Cdd:MTH00139  68 LPAFILLFLALPSLRLLYLMDEVSDPYLTFKAVGHQWYWSYEYSDFKNLSFDSYMIPTEDLSSGEFRLLEVDNRLVLPYK 147


                 ...
gi 37731387   82 TEV 84
Cdd:MTH00139 148 SNI 150
COX2 MTH00008
cytochrome c oxidase subunit II; Validated
 2-84 2.26e-30

cytochrome c oxidase subunit II; Validated


Pssm-ID: 164584 [Multi-domain]  Cd Length: 228  Bit Score: 106.48  E-value: 2.26e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMN 81
Cdd:MTH00008  68 LPALILLFLAFPSLRLLYLMDEVSNPSITLKTIGHQWYWSYEYSDFSNLEFDSYMLPTSDLSPGQFRLLEVDNRAVLPMQ 147


                 ...
gi 37731387   82 TEV 84
Cdd:MTH00008 148 TEI 150
COX2 pfam00116
Cytochrome C oxidase subunit II, periplasmic domain;
29-84 6.88e-30

Cytochrome C oxidase subunit II, periplasmic domain;


Pssm-ID: 395066 [Multi-domain]  Cd Length: 120  Bit Score: 102.10  E-value: 6.88e-30
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 37731387    29 ITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMNTEV 84
Cdd:pfam00116   1 LTIKAIGHQWYWSYEYTDFGDLEFDSYMIPTEDLEEGQLRLLEVDNRVVLPVETHI 56
COX2 MTH00168
cytochrome c oxidase subunit II; Provisional
 2-84 9.06e-29

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 177223 [Multi-domain]  Cd Length: 225  Bit Score: 102.37  E-value: 9.06e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMN 81
Cdd:MTH00168  68 IPAFILISLALPSLRLLYLMDEIDKPDLTIKAVGHQWYWSYEYTDYNDLEFDSYMVPTQDLSPGQFRLLEVDNRLVLPMD 147


                 ...
gi 37731387   82 TEV 84
Cdd:MTH00168 148 SKI 150
COX2 MTH00098
cytochrome c oxidase subunit II; Validated
 2-84 2.53e-28

cytochrome c oxidase subunit II; Validated


Pssm-ID: 177160 [Multi-domain]  Cd Length: 227  Bit Score: 101.33  E-value: 2.53e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMN 81
Cdd:MTH00098  68 LPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSDLKPGELRLLEVDNRVVLPME 147


                 ...
gi 37731387   82 TEV 84
Cdd:MTH00098 148 MPI 150
COX2 MTH00023
cytochrome c oxidase subunit II; Validated
 2-84 2.73e-28

cytochrome c oxidase subunit II; Validated


Pssm-ID: 214402 [Multi-domain]  Cd Length: 240  Bit Score: 101.37  E-value: 2.73e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDF--ENIEFDTYMTPESDLEINGFRLLDVDNRTILP 79
Cdd:MTH00023  77 IPAVILVFIALPSLKLLYLMDEVVSPALTIKAIGHQWYWSYEYSDYegETLEFDSYMVPTSDLNSGDFRLLEVDNRLVVP 156


                 ....*
gi 37731387   80 MNTEV 84
Cdd:MTH00023 157 INTHV 161
COX2 MTH00038
cytochrome c oxidase subunit II; Provisional
 3-84 5.86e-28

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 177113 [Multi-domain]  Cd Length: 229  Bit Score: 100.16  E-value: 5.86e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    3 PAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMNT 82
Cdd:MTH00038  69 PAFILIFIALPSLQLLYLMDEVNNPFLTIKAIGHQWYWSYEYTDYNDLEFDSYMVPTSDLSTGLPRLLEVDNRLVLPYQT 148


                 ..
gi 37731387   83 EV 84
Cdd:MTH00038 149 PI 150
COX2 MTH00051
cytochrome c oxidase subunit II; Provisional
 2-84 1.04e-27

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 177126 [Multi-domain]  Cd Length: 234  Bit Score: 99.86  E-value: 1.04e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDF--ENIEFDTYMTPESDLEINGFRLLDVDNRTILP 79
Cdd:MTH00051  70 IPAAILIFIAFPSLKLLYLMDEVIDPALTIKAIGHQWYWSYEYSDYgtDTIEFDSYMIPTSDLNSGDLRLLEVDNRLIVP 149


                 ....*
gi 37731387   80 MNTEV 84
Cdd:MTH00051 150 IQTQV 154
COX2 MTH00185
cytochrome c oxidase subunit II; Provisional
 2-84 7.90e-27

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 164736 [Multi-domain]  Cd Length: 230  Bit Score: 97.65  E-value: 7.90e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMN 81
Cdd:MTH00185  68 LPAIILIMIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEQLEFDSYMTPTQDLTPGQFRLLETDHRMVVPME 147


                 ...
gi 37731387   82 TEV 84
Cdd:MTH00185 148 SPI 150
COX2 MTH00076
cytochrome c oxidase subunit II; Provisional
 2-82 1.35e-26

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 164646 [Multi-domain]  Cd Length: 228  Bit Score: 96.77  E-value: 1.35e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMN 81
Cdd:MTH00076  68 MPAIILIVIALPSLRILYLMDEINDPHLTVKAIGHQWYWSYEYTDYEDLSFDSYMIPTQDLTPGQFRLLEVDNRMVVPME 147


                 .
gi 37731387   82 T 82
Cdd:MTH00076 148 S 148
COX2 MTH00129
cytochrome c oxidase subunit II; Provisional
 2-84 2.13e-25

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 177187 [Multi-domain]  Cd Length: 230  Bit Score: 93.62  E-value: 2.13e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMN 81
Cdd:MTH00129  68 LPAVILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMIPTQDLTPGQFRLLEADHRMVVPVE 147


                 ...
gi 37731387   82 TEV 84
Cdd:MTH00129 148 SPI 150
COX2 MTH00080
cytochrome c oxidase subunit II; Provisional
 29-84 9.36e-21

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 177149 [Multi-domain]  Cd Length: 231  Bit Score: 81.59  E-value: 9.36e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 37731387   29 ITIKTIGRQWYWSYEYSDFENIEFDTYMTPESDLEINGFRLLDVDNRTILPMNTEV 84
Cdd:MTH00080  98 LTVKVTGHQWYWSYEFSDIPGLEFDSYMKSLDQLRLGEPRLLEVDNRCVLPCDTNI 153
COX2 MTH00027
cytochrome c oxidase subunit II; Provisional
 2-84 1.18e-19

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 214405 [Multi-domain]  Cd Length: 262  Bit Score: 79.30  E-value: 1.18e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731387    2 LPAITLIFIALPSLRLLYLLDDSV-DALITIKTIGRQWYWSYEYSDF--ENIEFDTYMTPESDLEINGFRLLDVDNRTIL 78
Cdd:MTH00027  99 IPAFILILIAFPSLRLLYIMDECGfSANITIKVTGHQWYWSYSYEDYgeKNIEFDSYMIPTADLEFGDLRLLEVDNRLIL 178


                 ....*.
gi 37731387   79 PMNTEV 84
Cdd:MTH00027 179 PVDTNV 184
COX2 MTH00047
cytochrome c oxidase subunit II; Provisional
 30-57 4.64e-09

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 214412 [Multi-domain]  Cd Length: 194  Bit Score: 50.34  E-value: 4.64e-09
                         10        20
                 ....*....|....*....|....*...
gi 37731387   30 TIKTIGRQWYWSYEYSDfeNIEFDTYMT 57
Cdd:MTH00047  83 TIKVIGHQWYWSYEYSF--GGSYDSFMT 108
CyoA COG1622
Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];
1-46 2.58e-05

Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];


Pssm-ID: 441229 [Multi-domain]  Cd Length: 229  Bit Score: 40.20  E-value: 2.58e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 37731387   1 ALPAITLIFIALPSLRLLYLLDDSVDALITIKTIGRQWYWSYEYSD 46
Cdd:COG1622  85 VIPIIIVIVLAVPTLRVLHALDDAPEDPLTVEVTGYQWKWLFRYPD 130
CoxB TIGR02866
cytochrome c oxidase, subunit II; Cytochrome c oxidase is the terminal electron acceptor of ...
 29-46 4.16e-03

cytochrome c oxidase, subunit II; Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions. [Energy metabolism, Electron transport]


Pssm-ID: 274329 [Multi-domain]  Cd Length: 199  Bit Score: 33.89  E-value: 4.16e-03
                          10
                  ....*....|....*...
gi 37731387    29 ITIKTIGRQWYWSYEYSD 46
Cdd:TIGR02866  91 LKVKVTGYQWWWDFEYPE 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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