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Conserved domains on  [gi|31071922|gb|AAN75399|]
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ATPase subunit 6 (mitochondrion) [Apteryx mantelli mantelli]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009577)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 1.79e-105

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 177190  Cd Length: 227  Bit Score: 303.33  E-value: 1.79e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    1 MNLSFFDQFASPQLLGIPLILLSTLFPALLLPSPTNRWMTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMTFL 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   81 LLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31071922  161 LTANLTAGHLLIQLISTATMTLLPIMPAISILTGSILLLLTILELAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 1.79e-105

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 303.33  E-value: 1.79e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    1 MNLSFFDQFASPQLLGIPLILLSTLFPALLLPSPTNRWMTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMTFL 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   81 LLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31071922  161 LTANLTAGHLLIQLISTATMTLLPIMPAISILTGSILLLLTILELAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 19-227 2.94e-43

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 145.04  E-value: 2.94e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    19 LILLSTLFPALLLPSPTNRWMTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMTFLLLINLLGLLPYTFTPTTQ 98
Cdd:TIGR01131  20 LILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLIPYSFTPTSH 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    99 LSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTA 178
Cdd:TIGR01131 100 LSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGL 179

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 31071922   179 TMTLlpIMPAISILTGSILLLLTILELAVAMIQAYVFVLLLSLYLQENI 227
Cdd:TIGR01131 180 LFSL--MSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 6.02e-31

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 111.34  E-value: 6.02e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922  66 GHKWALILSSLMTFLLLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILI 145
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 31071922 146 ETTSLLIRPLALGVRLTANLTAGHLLIQLISTATMTLLPIMPAISILtgsILLLLTILELAVAMIQAYVFVLLLSLYLQ 224
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLPLL---LPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
63-224 3.12e-25

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 98.33  E-value: 3.12e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    63 NKMGHKWALILSSLMTFLL---LINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVS-LGHLLPEGTPTIL 138
Cdd:pfam00119  51 KKKGRKFFPLLLTLFFFILvsnLLGLIPKSPGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPL 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   139 IPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATMTLLPIMPAISILTGSILLLLTILELAVAMIQAYVFVLL 218
Cdd:pfam00119 131 VPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTML 210


                  ....*.
gi 31071922   219 LSLYLQ 224
Cdd:pfam00119 211 TAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 49-225 1.63e-14

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 69.72  E-value: 1.63e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922  49 WFLQLITKQLMIPLNKMGHKWALILSSLMTFLLLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVS-LG 127
Cdd:COG0356  37 MLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGLGGyLK 116

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922 128 HLLPEGTPtILIPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLIstatmTLLPIMPAISILTGSILLLLTILELAV 207
Cdd:COG0356 117 HLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLL-----AGLAPFLLLGVLSLLLPVAWTAFELLV 190

                       170
                ....*....|....*...
gi 31071922 208 AMIQAYVFVLLLSLYLQE 225
Cdd:COG0356 191 GFLQAYIFTMLTAVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 1.79e-105

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 303.33  E-value: 1.79e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    1 MNLSFFDQFASPQLLGIPLILLSTLFPALLLPSPTNRWMTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMTFL 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   81 LLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31071922  161 LTANLTAGHLLIQLISTATMTLLPIMPAISILTGSILLLLTILELAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-227 4.29e-104

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 300.20  E-value: 4.29e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    1 MNLSFFDQFASPQLLGIPLILLSTLFPALLLPSPTNRWMTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMTFL 80
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   81 LLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31071922  161 LTANLTAGHLLIQLISTATMTLLPIMPAISILTGSILLLLTILELAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-227 4.16e-102

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 294.95  E-value: 4.16e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    1 MNLSFFDQFASPQLLGIPLILLSTLFPALLLPSPTNRWMTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMTFL 80
Cdd:MTH00073   1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPTNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   81 LLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00073  81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31071922  161 LTANLTAGHLLIQLISTATMTLLPIMPAISILTGSILLLLTILELAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00073 161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-226 5.88e-78

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 233.69  E-value: 5.88e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    1 MNLSFFDQFASPQLLGIPLILLSTLFPALLLPSPTNRWMTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMTFL 80
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   81 LLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 31071922  161 LTANLTAGHLLIQLISTATMTLLPIMPAISILTGSILLLLTILELAVAMIQAYVFVLLLSLYLQEN 226
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.34e-73

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 222.13  E-value: 2.34e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    1 MNLSFFDQFASPQLLGIPLILLSTLFPALLLPSPtNRWMTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMTFL 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTP-NRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   81 LLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00101  80 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 31071922  161 LTANLTAGHLLIQLISTATMTLLPIMPAISILTGSILLLLTILELAVAMIQAYVFVLLLSLYLQEN 226
Cdd:MTH00101 160 LTANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDN 225
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 19-227 2.94e-43

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 145.04  E-value: 2.94e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    19 LILLSTLFPALLLPSPTNRWMTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMTFLLLINLLGLLPYTFTPTTQ 98
Cdd:TIGR01131  20 LILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLIPYSFTPTSH 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    99 LSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTA 178
Cdd:TIGR01131 100 LSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGL 179

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 31071922   179 TMTLlpIMPAISILTGSILLLLTILELAVAMIQAYVFVLLLSLYLQENI 227
Cdd:TIGR01131 180 LFSL--MSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 1-227 3.83e-41

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 139.72  E-value: 3.83e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    1 MNLSFFDQFASPQLLGIPLILLSTLFPAL-LLPSPTNRWMTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMTF 79
Cdd:MTH00035   3 INNSIFGQFSPDTILFIPLTLLSSVIALSwLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   80 LLLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGV 159
Cdd:MTH00035  83 ILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGL 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 31071922  160 RLTANLTAGHLLIQLISTATMTLLPiMPAISILTGSILLLLTILELAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00035 163 RLAANLTAGHLLIFLLSTAIWELSN-SPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQNI 229
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 15-225 6.45e-39

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 133.75  E-value: 6.45e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   15 LGIPLILLSTLFPALLLPSptNRW-MTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMTFLLLINLLGLLPYTF 93
Cdd:MTH00157  15 FNLSLNWLSTFLGLLFIPS--SFWlIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFILFNNFLGLFPYIF 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   94 TPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGVRLTANLTAGHLLIQ 173
Cdd:MTH00157  93 TSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVRLAANMIAGHLLLT 172

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 31071922  174 LISTATMTLLPIMPAISILTGSillLLTILELAVAMIQAYVFVLLLSLYLQE 225
Cdd:MTH00157 173 LLGNTGPSLSSMILSILILIQI---LLLILESAVAIIQSYVFSVLSTLYSSE 221
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 4-225 3.14e-35

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 124.59  E-value: 3.14e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    4 SFFDQFASPQLLGIPLILLSTLFPALLLPSPTnRWMTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMTFLLLI 83
Cdd:MTH00173   7 SSFDDHNSSFSSLSFLMWLLSLMSLFFFSSSV-WVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLISL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   84 NLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGVRLTA 163
Cdd:MTH00173  86 NLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLA 165

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 31071922  164 NLTAGHLLIQLISTATMTLLPIMPAISILTGSILLLLTILE-LAVAMIQAYVFVLLLSLYLQE 225
Cdd:MTH00173 166 NISAGHIVLTLIGNYLSSSLFSSSVVSLLLVLLIQVGYFIFeVAVMLIQAYIFTLLIKLYSDE 228
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-226 8.19e-35

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 123.60  E-value: 8.19e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    1 MNLSFFDQFASPQLLGIPLILLSTLFPAL-LLPSPTNRWMT-NRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMT 78
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIFSMISLSWITLLLfLLLMPSSVWFCpSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   79 FLLLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALG 158
Cdd:MTH00176  81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 31071922  159 VRLTANLTAGHLLIQLISTATMTLLPIMPAISILTGSILLLLTILELAVAMIQAYVFVLLLSLYLQEN 226
Cdd:MTH00176 161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEH 228
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 6.02e-31

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 111.34  E-value: 6.02e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922  66 GHKWALILSSLMTFLLLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILI 145
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 31071922 146 ETTSLLIRPLALGVRLTANLTAGHLLIQLISTATMTLLPIMPAISILtgsILLLLTILELAVAMIQAYVFVLLLSLYLQ 224
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLPLL---LPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 18-222 1.85e-28

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 107.13  E-value: 1.85e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   18 PLILLSTLFPALLLPSPTNRWMTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLMTFLLLINLLGLLPYTFTPTT 97
Cdd:MTH00005  22 STAFWAFNFSIILLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMNLSGLLPYVFSTSS 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   98 QLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLIST 177
Cdd:MTH00005 102 HLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIVLSLIGI 181

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 31071922  178 ATMTLLPIMPAISILTGSILLLLTILELAVAMIQAYVFVLLLSLY 222
Cdd:MTH00005 182 YAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLY 226
ATP-synt_A pfam00119
ATP synthase A chain;
63-224 3.12e-25

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 98.33  E-value: 3.12e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    63 NKMGHKWALILSSLMTFLL---LINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVS-LGHLLPEGTPTIL 138
Cdd:pfam00119  51 KKKGRKFFPLLLTLFFFILvsnLLGLIPKSPGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPL 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   139 IPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATMTLLPIMPAISILTGSILLLLTILELAVAMIQAYVFVLL 218
Cdd:pfam00119 131 VPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTML 210


                  ....*.
gi 31071922   219 LSLYLQ 224
Cdd:pfam00119 211 TAVYIS 216
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-227 2.46e-24

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 96.26  E-value: 2.46e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    1 MNLSFFDQFASPQLLGI---PLILLSTLFPALLLpSPTNRWMTNRLSTLQSWFLQLITKQLMIPLNKMGHKWALILSSLM 77
Cdd:MTH00172   1 MSSSYFDQFNIVWLIGLtnsSIMMILVIIVVLLL-FKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   78 TFLLLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLAL 157
Cdd:MTH00172  80 FFIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISL 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922  158 GVRLTANLTAGHLLIQLISTATMTLLPIMPAISILTGSILLLLTILELAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00172 160 GVRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTI 229
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 1-227 8.10e-23

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 92.38  E-value: 8.10e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922    1 MNLSFFDQFASPQLLGIPLILLSTLFpalllpSPTNRWMTNRLSTLQSWFL-----------QLITKQLMI--------P 61
Cdd:MTH00175   1 MLAAYFDQFNIIRLITIQAFLGDWLV------TFTNSSMMMVLAVIIFWLLlkgdklipnrwQSIMELIYLnirsvvhdN 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   62 LNKMGHKWALILSSLMTFLLLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPA 141
Cdd:MTH00175  75 LGKSGQKYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPF 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922  142 LILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATMTLLPI-MPAISILTGSILLLLTILELAVAMIQAYVFVLLLS 220
Cdd:MTH00175 155 LVLIETLSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNgLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTT 234


                 ....*..
gi 31071922  221 LYLQENI 227
Cdd:MTH00175 235 IYLGDTI 241
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 49-225 1.63e-14

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 69.72  E-value: 1.63e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922  49 WFLQLITKQLMIPLNKMGHKWALILSSLMTFLLLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVS-LG 127
Cdd:COG0356  37 MLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGLGGyLK 116

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922 128 HLLPEGTPtILIPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLIstatmTLLPIMPAISILTGSILLLLTILELAV 207
Cdd:COG0356 117 HLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLL-----AGLAPFLLLGVLSLLLPVAWTAFELLV 190

                       170
                ....*....|....*...
gi 31071922 208 AMIQAYVFVLLLSLYLQE 225
Cdd:COG0356 191 GFLQAYIFTMLTAVYISL 208
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 63-227 3.60e-14

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 69.20  E-value: 3.60e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   63 NKMGHKWALILSsLMTFLLLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPAL 142
Cdd:MTH00174  85 NKGGNYLAFVLS-LFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLL 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922  143 ILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATMTLLPIMPAI-SILTGSILLLLTILELAVAMIQAYVFVLLLSL 221
Cdd:MTH00174 164 TIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIgSFVPFAILIFVTILEMAVAIIQAYVFTLLTIV 243


                 ....*.
gi 31071922  222 YLQENI 227
Cdd:MTH00174 244 YLRDTV 249
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 64-225 5.83e-13

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 65.59  E-value: 5.83e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   64 KMGHKWALILSSLMTFLLLINLLGLLP-YTFTPTTQLSMNMALAFPLWLATLLTGLRNQpsvSLGHLLPEGTPTIlIPAL 142
Cdd:PRK05815  67 GKGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKK---GLGGYLKEFYLQP-HPLL 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922  143 ILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATMTLLPIMPAISILTgsilLLLTILELAVAMIQAYVFVLLLSLY 222
Cdd:PRK05815 143 LPIEIISEFSRPISLSLRLFGNMLAGELILALIALLGGAGLLLALAPLILP----VAWTIFEIFVGTLQAYIFMMLTIVY 218


                 ...
gi 31071922  223 LQE 225
Cdd:PRK05815 219 ISM 221
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 48-225 1.58e-09

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 55.37  E-value: 1.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   48 SWFLQLITKQLMIPLNKMGHKWALILSSLMTFLLLINLLG-----LLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNqp 122
Cdd:MTH00087  25 SMLNVLVKKFFGLLIIVFSYSNKLPLSSVISFFTFIVLLLfcfggLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSK-- 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922  123 SVSLGHLLPEGTPTILIP-ALILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATMTLLPIMpaisiltgsilLLLT 201
Cdd:MTH00087 103 SEKFSVYLSKGSDSFLKTfSMLFVEIVSELSRPLALTLRLTVNLMVGHLISSLLNFLGEKYVWLS-----------ILAI 171

                        170       180
                 ....*....|....*....|....
gi 31071922  202 ILELAVAMIQAYVFVLLLSLYLQE 225
Cdd:MTH00087 172 MMECFVAFIQSYIFSRLIYLYLNE 195
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 94-223 3.53e-07

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 49.89  E-value: 3.53e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   94 TPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIE-TTSLLIRPLALGVRLTANLTAGHLLI 172
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEfIVSPMAKTFALTVRLLANMTAGHVII 296

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 31071922  173 -QLISTATMTLLPIMPAISILTGSILLLLTILelaVAMIQAYVFVLLLSLYL 223
Cdd:PRK13417 297 lALMGFIFQFQSWGIVPVSVIGSGLIYVLEIF---VAFLQAYIFVLLTSLFV 345
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 90-223 5.48e-06

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 46.27  E-value: 5.48e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   90 PYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLGHLLPEGTPTILIPALILIETTSLLIRPLALGVRLTANLTAGH 169
Cdd:PRK13419 191 PYGATATGNINVTLTLAVFTFFITQYAAIKAHGIKGYLAHLTGGTHWSLWIIMIPIEFIGLFTKPFALTVRLFANMTAGH 270

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 31071922  170 LLI-QLISTATMTLLPIM-PAISIltgSILLLLTILELAVAMIQAYVFVLLLSLYL 223
Cdd:PRK13419 271 IVIlSLIFISFILKSYIVaVAVSV---PFAIFIYLLELFVAFLQAYIFTMLSALFI 323
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 48-168 9.20e-03

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 35.63  E-value: 9.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31071922   48 SWFLQLITKQLMIPLNKMGHKWaliLSSLMTFLLLINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSVSLG 127
Cdd:MTH00050   4 NDFSSLFSLIYKLILGGSVSYY---YSVVLFIVLFLFLLYRLPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 31071922  128 HLLPEGTPTILIPALILIETTSLLIRPLALGVRLTANLTAG 168
Cdd:MTH00050  81 SFVPVGTPLYICPFVCIAETISYIIRPVVLILRPFINISLG 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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