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Conserved domains on  [gi|31322426|gb|AAP21047|]
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cytochrome b, partial (mitochondrion) [Xenopus laevis]

Protein Classification

cytochrome b( domain architecture ID 1000033)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31791
cytochrome b; Provisional
 1-96 1.34e-73

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00074:

Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 222.25  E-value: 1.34e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00074  48 TGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMAT 127

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00074 128 AFVGYVLPWGQMSFWG 143
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-96 1.34e-73

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 222.25  E-value: 1.34e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00074  48 TGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMAT 127

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00074 128 AFVGYVLPWGQMSFWG 143
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-96 1.83e-41

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 134.80  E-value: 1.83e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426   1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSF--LYKETWNIGVILLFLVM 78
Cdd:cd00284  39 TGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTM 118

                        90
                ....*....|....*...
gi 31322426  79 ATAFVGYVLPWGQMSFWG 96
Cdd:cd00284 119 ATAFMGYVLPWGQMSYWG 136
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-96 1.47e-40

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 137.23  E-value: 1.47e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426   1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSflYKE----TWNIGVILLFL 76
Cdd:COG1290  56 TGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLL 133

                        90       100
                ....*....|....*....|
gi 31322426  77 VMATAFVGYVLPWGQMSFWG 96
Cdd:COG1290 134 TMAEAFTGYSLPWDQLSYWG 153
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-96 9.05e-39

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 127.50  E-value: 9.05e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426     1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLY--KETWNIGVILLFLVM 78
Cdd:pfam00033  30 TGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYprELTWVIGVILLVLTM 109

                          90
                  ....*....|....*...
gi 31322426    79 ATAFVGYVLPWGQMSFWG 96
Cdd:pfam00033 110 STAFIGYVLPWGQMSYWG 127
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-96 1.34e-73

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 222.25  E-value: 1.34e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00074  48 TGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMAT 127

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00074 128 AFVGYVLPWGQMSFWG 143
CYTB MTH00119
cytochrome b; Provisional
 1-96 2.28e-72

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 219.00  E-value: 2.28e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00119  48 TGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMAT 127

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00119 128 AFVGYVLPWGQMSFWG 143
CYTB MTH00131
cytochrome b; Provisional
 1-96 1.29e-71

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 217.21  E-value: 1.29e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00131  47 TGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMT 126

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00131 127 AFVGYVLPWGQMSFWG 142
CYTB MTH00100
cytochrome b; Provisional
 1-96 1.81e-69

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 211.42  E-value: 1.81e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00100  47 TGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMAT 126

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00100 127 AFMGYVLPWGQMSFWG 142
CYTB MTH00156
cytochrome b; Provisional
 1-96 4.44e-66

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 201.93  E-value: 4.44e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00156  37 TGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMAT 116

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00156 117 AFLGYVLPWGQMSFWG 132
CYTB MTH00191
cytochrome b; Provisional
 1-96 1.22e-65

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 201.30  E-value: 1.22e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00191  44 TGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMAT 123

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00191 124 AFLGYVLPWGQMSFWG 139
CYTB MTH00145
cytochrome b; Provisional
 1-96 2.45e-61

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 190.50  E-value: 2.45e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00145  48 TGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGT 127

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00145 128 AFLGYVLPWGQMSFWG 143
CYTB MTH00034
cytochrome b; Validated
 1-96 3.35e-61

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 190.30  E-value: 3.35e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00034  47 TGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLT 126

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00034 127 AFVGYVLPWGQMSFWA 142
CYTB MTH00016
cytochrome b; Validated
 1-96 2.64e-57

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 180.26  E-value: 2.64e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00016  48 TGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMAT 127

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00016 128 AFLGYVLPWGQMSFWG 143
CYTB MTH00224
cytochrome b; Provisional
 1-96 1.89e-49

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 160.09  E-value: 1.89e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00224  48 TGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMAT 127

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00224 128 AFLGYVLPWGQMSFWG 143
CYTB MTH00022
cytochrome b; Validated
 1-96 4.01e-47

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 154.09  E-value: 4.01e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00022  46 TGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMAT 125

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00022 126 AFMGYVLPWGQMSFWG 141
CYTB MTH00053
cytochrome b; Provisional
 1-95 4.79e-44

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 146.00  E-value: 4.79e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00053  48 TGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILT 127

                         90
                 ....*....|....*
gi 31322426   81 AFVGYVLPWGQMSFW 95
Cdd:MTH00053 128 AFIGYVLPWGQMSFW 142
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-96 1.83e-41

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 134.80  E-value: 1.83e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426   1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSF--LYKETWNIGVILLFLVM 78
Cdd:cd00284  39 TGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTM 118

                        90
                ....*....|....*...
gi 31322426  79 ATAFVGYVLPWGQMSFWG 96
Cdd:cd00284 119 ATAFMGYVLPWGQMSYWG 136
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-96 1.47e-40

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 137.23  E-value: 1.47e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426   1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSflYKE----TWNIGVILLFL 76
Cdd:COG1290  56 TGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLL 133

                        90       100
                ....*....|....*....|
gi 31322426  77 VMATAFVGYVLPWGQMSFWG 96
Cdd:COG1290 134 TMAEAFTGYSLPWDQLSYWG 153
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-96 9.05e-39

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 127.50  E-value: 9.05e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426     1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLY--KETWNIGVILLFLVM 78
Cdd:pfam00033  30 TGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYprELTWVIGVILLVLTM 109

                          90
                  ....*....|....*...
gi 31322426    79 ATAFVGYVLPWGQMSFWG 96
Cdd:pfam00033 110 STAFIGYVLPWGQMSYWG 127
CYTB MTH00033
cytochrome b; Provisional
 1-96 6.82e-38

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 130.06  E-value: 6.82e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00033  44 TGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLT 123

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00033 124 AFIGYVLPWGQMSFWA 139
CYTB MTH00086
cytochrome b; Provisional
 1-96 1.51e-32

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 115.42  E-value: 1.51e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00086  36 TGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMME 115

                         90
                 ....*....|....*.
gi 31322426   81 AFVGYVLPWGQMSFWG 96
Cdd:MTH00086 116 AFMGYVLVWAQMSFWA 131
CYTB MTH00046
cytochrome b; Validated
 1-95 1.22e-23

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 91.97  E-value: 1.22e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00046  38 TGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVE 117

                         90
                 ....*....|....*
gi 31322426   81 AFVGYVLPWGQMSFW 95
Cdd:MTH00046 118 AFLGYILPWHQMSYW 132
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
42-96 2.13e-15

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 66.88  E-value: 2.13e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 31322426    42 SFFFICIYLHIGRGLYYGSFLYKE--TWNIGVILLFLVMATAFVGYVLPWGQMSFWG 96
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTG 57
petB CHL00070
cytochrome b6
 1-95 3.17e-14

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 64.74  E-value: 3.17e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31322426    1 TGLFLAMHYTADTSMAFSSGAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKE--TWNIGVILLFLVM 78
Cdd:CHL00070  50 TGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTV 129

                         90
                 ....*....|....*..
gi 31322426   79 ATAFVGYVLPWGQMSFW 95
Cdd:CHL00070 130 SFGVTGYSLPWDQIGYW 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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