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Conserved domains on  [gi|37780951|gb|AAP32814|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Amazona tresmariae]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.13e-143

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 409.21  E-value: 2.13e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    1 MTPTAKLILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  161 SITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYILMTASIFLTMNTTNISKLSTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  241 NTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 37780951  321 TNTPISVLTSLSISLLPLSPMIFTIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.13e-143

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 409.21  E-value: 2.13e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    1 MTPTAKLILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  161 SITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYILMTASIFLTMNTTNISKLSTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  241 NTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 37780951  321 TNTPISVLTSLSISLLPLSPMIFTIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-298 1.27e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 104.04  E-value: 1.27e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   8 ILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLF--------SSTIN- 77
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNl 185

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  78 ---AWHTGQWDIAQLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSlttalll*t*mklPPTT-------------- 140
Cdd:COG1007 186 agiAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-------------TPVTaflatapkiaafaa 252

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951 141 ---LLLITSHSLNP---TLLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMI-IIAYNPK-LTLLTFY--TYIL 210
Cdd:COG1007 253 llrLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLF 332

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951 211 MTASIFLTM--------NTTNISKLSTLmtsWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMII 282
Cdd:COG1007 333 MNLGAFAVIlllsrkggEAEEIEDLAGL---ARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIA 409

                       330
                ....*....|....*.
gi 37780951 283 SMASLLGLFFYLRLAY 298
Cdd:COG1007 410 VLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-266 3.13e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 91.99  E-value: 3.13e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    23 SNHWTTAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL-TYPPAC----- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    96 -----LLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MK------LPPTTLLLITSHSLNPTLLTTMSIMSITL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   165 GGWMGLNQTQTRKVLA*SSISYLGWMMIIIA----YNPKLTLLTFYTYILMTASIFL--------TMNTTNISKLSTLmt 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....
gi 37780951   233 sWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLI 271
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-297 2.35e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 82.69  E-value: 2.35e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951     8 ILALSILLGTTITITSNHWTTAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDI 86
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    87 AQL-----TYPP-------ACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLL-------ITSH 147
Cdd:TIGR01770 186 EDLllflsNGMLnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFS 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   148 SLNPTLLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTL--LTFY--TYILMTASIFLTM---- 219
Cdd:TIGR01770 266 EAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLsllr 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   220 --NTTNISKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLA 297
Cdd:TIGR01770 346 syKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.13e-143

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 409.21  E-value: 2.13e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    1 MTPTAKLILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  161 SITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYILMTASIFLTMNTTNISKLSTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  241 NTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 37780951  321 TNTPISVLTSLSISLLPLSPMIFTIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 6.52e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 341.90  E-value: 6.52e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    1 MTPTAKLILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSLNPTLLTTMSIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  161 SITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYILMTASIFLTMNTTNISKLSTLMTSWTKTPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  241 NTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*
gi 37780951  321 TNTPISVLTSLSISLLPLSPMIFTI 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-323 1.71e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 341.01  E-value: 1.71e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    1 MTPTAKLILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSlNPTLLTTMSIM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  161 SITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYILMTASIFLTMNTTNISKLSTLMTSWTKTPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  241 NTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319


                 ...
gi 37780951  321 TNT 323
Cdd:MTH00135 320 QLT 322
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-325 4.58e-101

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 301.77  E-value: 4.58e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    1 MTPTAKLILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSLNPTLLTTMSIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  161 SITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYILMTASIFLTMNTTNISKLSTLMTSWTKTPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  241 NTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAYCSTITL-PPNPSSKMKqWSTKN 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMfPSTNNMKMK-WQFEN 319


                 ....*.
gi 37780951  320 PTNTPI 325
Cdd:MTH00105 320 TKPMTL 325
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 4.27e-87

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 266.06  E-value: 4.27e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    1 MTPTAKLILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSLNPTLLTTMSIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  161 SITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYILMTASIFLTMNTTNISKLSTLMTSWTKTPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  241 NTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 37780951  321 TNTPISVLTSLSISLLPLSPMIFTIT 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 7-322 5.07e-81

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 250.62  E-value: 5.07e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    7 LILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDI 86
Cdd:MTH00041   7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   87 AQLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSLNPTLLTTMSIMSITLGG 166
Cdd:MTH00041  87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  167 WMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYILMTASIFLTMNTTNISKLSTLMTSWTKTPMLNTTLML 246
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 37780951  247 TLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNPTN 322
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNIT 322
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 4.34e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 175.40  E-value: 4.34e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    1 MTPTAKLILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   81 TGqwdiaqLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLlitSHSLNPTLLTTMSIM 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  161 SITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYILMTASIFLTMNTTNISKLSTLMTSWTKTPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  241 NTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAYCSTITlppnpSSKMKQWSTKNP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLML-----NYNKNKWNLKKK 307

                        330       340
                 ....*....|....*....|....*
gi 37780951  321 TNTPISVLTSLSISLLPLSPMIFTI 345
Cdd:MTH00160 308 KNKFSLILNFLSFISLFGLILSSLL 332
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-325 3.26e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 157.36  E-value: 3.26e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   13 ILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAqltyp 92
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   93 pacLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPttLLLITSHSLNPTLLTT---MSIMSITLGGWMG 169
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLSALVGSIGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  170 LNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYILMTASIFLTMNTTNISKLSTlMTSWTKTPMLNTTLMLTLL 249
Cdd:MTH00144 163 LNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLSIISLLL 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 37780951  250 SLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAYCSTITlppnpSSKMKQWSTKNPTNTPI 325
Cdd:MTH00144 242 SLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLS-----SSKSKKSNSSKVLNSSI 312
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 12-325 2.21e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 149.93  E-value: 2.21e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   12 SILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTInawhtgQWDIAQLTY 91
Cdd:MTH00011  14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLK 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   92 PPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSLNPTLLTTMSIMSITLGGWMGLN 171
Cdd:MTH00011  88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  172 QTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYILMTASIFLTMNTTNISKLSTLMTSWTKTPMLNTTLMLTLLSL 251
Cdd:MTH00011 168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 37780951  252 AGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNPTNTPI 325
Cdd:MTH00011 248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKILISM 321
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-313 3.62e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 141.35  E-value: 3.62e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    8 ILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTgqwdia 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   88 qLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPttLLLITSHSLNPTLLTTMSIMSITLGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  168 MGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYILMTASIFLTMNTTNISKLSTLMTSWTKTPMLNTTLMLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 37780951  248 LLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAYCSTITLPPNPSSKMK 313
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-298 1.27e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 104.04  E-value: 1.27e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   8 ILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLF--------SSTIN- 77
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNl 185

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  78 ---AWHTGQWDIAQLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSlttalll*t*mklPPTT-------------- 140
Cdd:COG1007 186 agiAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-------------TPVTaflatapkiaafaa 252

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951 141 ---LLLITSHSLNP---TLLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMI-IIAYNPK-LTLLTFY--TYIL 210
Cdd:COG1007 253 llrLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLF 332

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951 211 MTASIFLTM--------NTTNISKLSTLmtsWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMII 282
Cdd:COG1007 333 MNLGAFAVIlllsrkggEAEEIEDLAGL---ARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIA 409

                       330
                ....*....|....*.
gi 37780951 283 SMASLLGLFFYLRLAY 298
Cdd:COG1007 410 VLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 1.12e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 97.41  E-value: 1.12e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   13 ILLGTTITITSNHWTTAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASTLMLFS-------------STINA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   79 WHTGQWDIAQLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLppTTLLLITSHSLNPTLLTTMS 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKL--GIFSILVSIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  159 IMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNP----KLTLLTFYTYILMTASIF--LTMNTTNISKLSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiILALNVYKNLIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 37780951  233 SWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-296 2.04e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.58  E-value: 2.04e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    8 ILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDI 86
Cdd:PRK05777 107 LLVLFALLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSF 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   87 AQL--------TYPP----ACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKL----PPTTLLLITSHSLN 150
Cdd:PRK05777 187 AGIakaladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLS 266

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  151 PT---LLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTL--LTFY--TYILMTASIF--LTM-- 219
Cdd:PRK05777 267 EDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYllAYLFMTLGAFgvISLlr 346

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  220 ----NTTNISKLSTLmtSWTKtPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLR 295
Cdd:PRK05777 347 rkggEAESISDFAGL--SKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLR 423


                 .
gi 37780951  296 L 296
Cdd:PRK05777 424 V 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-266 3.13e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 91.99  E-value: 3.13e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    23 SNHWTTAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL-TYPPAC----- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    96 -----LLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MK------LPPTTLLLITSHSLNPTLLTTMSIMSITL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   165 GGWMGLNQTQTRKVLA*SSISYLGWMMIIIA----YNPKLTLLTFYTYILMTASIFL--------TMNTTNISKLSTLmt 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....
gi 37780951   233 sWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLI 271
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-297 2.35e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 82.69  E-value: 2.35e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951     8 ILALSILLGTTITITSNHWTTAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDI 86
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    87 AQL-----TYPP-------ACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLL-------ITSH 147
Cdd:TIGR01770 186 EDLllflsNGMLnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFS 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   148 SLNPTLLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTL--LTFY--TYILMTASIFLTM---- 219
Cdd:TIGR01770 266 EAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLsllr 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   220 --NTTNISKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLA 297
Cdd:TIGR01770 346 syKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-296 2.47e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 82.76  E-value: 2.47e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    8 ILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   87 ----AQLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSLNPTLLTtmSIMSI 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  163 TLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNP----KLTLLTFYTYILMTA---SIFLTMNTTN--ISKLSTLMTs 233
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSIcsfSIILSLKLTKglIVEVSGLSR- 337

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 37780951  234 wtKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRL 296
Cdd:MTH00199 338 --KNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-296 2.33e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 76.82  E-value: 2.33e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    3 PTAKLILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAI---------EAATKYFLVQAAASTLMLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   74 STINAWHTGQ--------------WDIAQLTYPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLppT 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  140 TLLLITSHSLNPTLLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYI---LMTASIF 216
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAvtyLVSALAS 424

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  217 LTM----------------------NTTNISKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQE 274
Cdd:MTH00198 425 FTVictleefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIA 504

                        330       340
                 ....*....|....*....|....*....
gi 37780951  275 MTTTTMIISMASLLGL-------FFYLRL 296
Cdd:MTH00198 505 FSSSLSIYYLVALFAIictcisaFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 14-296 2.94e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 76.34  E-value: 2.94e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  14 LLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL---- 89
Cdd:COG0651 117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarl 196

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  90 -TYPP-----ACLLLTTAIATKLGLAPLHFWFPEVlqgsslttalll*t*MKLPPT--------------------TLLL 143
Cdd:COG0651 197 aELDPglllaAFALLLVGFGIKAALFPLHFWLPDA---------------YPAAPSpvsallsglltkvgvyailrVLTL 261

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951 144 ITSHSLNP---TLLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLL--TFYT--YILMTASIF 216
Cdd:COG0651 262 LFGADPALflgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAgaLFHLlnHALAKALLF 341

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951 217 LT-------MNTTNISKLSTLmtsWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLG 289
Cdd:COG0651 342 LAagaieraTGTRDLDKLGGL---GKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLT 418


                ....*..
gi 37780951 290 LFFYLRL 296
Cdd:COG0651 419 LAYFVRI 425
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 3.94e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 66.83  E-value: 3.94e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   33 LEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQLT--YPPACLLLT------TAIAT 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  105 KLGLAPLHFWFPEVLQG-SSLTTALLL*T*MKLPPTTLLLITSHSLNP---------TLLTTMSIMSITLGGWMGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  175 TRKVLA*SSISYLGWMMIIIAYNPKLTLL--TFY---------TYILMTASIFLTMNTTNISKLSTLMTswtKTPMLNTT 243
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAagLLHllhhalmkgALFLAAGAIEVTYGTRRLSELSGLGR---RMPLTAAA 371

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 37780951  244 LMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAY 298
Cdd:PRK08375 372 FAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-263 2.21e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 64.64  E-value: 2.21e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    1 MTPTAKLILALSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHP-RAIEAATKYFLVQAAASTLML--FSST-- 75
Cdd:CHL00049 108 MAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLyg 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   76 INAWHTGQWDIA------QLTYPPACLL----LTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MK---LPPTTLL 142
Cdd:CHL00049 188 LSGGEIELQEIVnglintQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKvaaSALATRI 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  143 LITSHSLNPT----LLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMI-IIAYNPKL---TLLTF-YTYILMTA 213
Cdd:CHL00049 268 FDIPFYFSSNewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNDgyaSMITYmLFYIFMNL 347

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 37780951  214 SIF-------LTMNTTNISKLSTLmtsWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049 348 GTFacivlfgLRTGTDNIRDYAGL---YTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 3-298 2.70e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 64.63  E-value: 2.70e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    3 PTAKLILALSILLGTTITITSNHWTTAWAGLEINTLS---IIPMISKshhpRAIEAATKYFLVQAAASTLMLFSSTINAW 79
Cdd:PRK08668  97 DAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYA 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   80 HTGQWDIAQ----LTYPP-------ACLLLTTAIATKLGLAPLHFWFPE-----------VLQGS-SLTTALLL*T*MKL 136
Cdd:PRK08668 173 KTGTFDFADisqgLINDTstgfaliVFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQlSKLGAYGFLLVLYV 252

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  137 PPTTLLLIT-----SHSLNPTLLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLT----LLTFYT 207
Cdd:PRK08668 253 LPGTKLFSEfgtyrGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFN 332

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  208 YILMTASIFLTM-------NTTNISKLSTLMTswtKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTM 280
Cdd:PRK08668 333 HALFKGLFFLIFaaviyrtGTTKISEMGGLIE---KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAF 409

                        330
                 ....*....|....*...
gi 37780951  281 IISMASLLGLFFYLRLAY 298
Cdd:PRK08668 410 MAFFGSIGSFLYVFRPLA 427
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-266 1.18e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 59.40  E-value: 1.18e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  48 HHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL-----------TYPPACLLLTTAIATKLGLAPLHFWFP 116
Cdd:COG1009 156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptilsspLLTLILLLLLLGAFGKSAQFPLHFWLP 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951 117 EVLQGsslttalll*t*mklpPTTL---------------LLITSH---SLNPTLLTTMSIM-SITL--GGWMGLNQTQT 175
Cdd:COG1009 236 DAMEG----------------PTPVsallhaatmvkagvyLLARLSplfALSPVWLTVVAIIgAITAlfAALIALAQTDI 299

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951 176 RKVLA*SSISYLGWMMIII---AYNPKLTLLTfyTYILMTASIFL-------TMNTTNISKLSTLmtsWTKTPMLNTTLM 245
Cdd:COG1009 300 KRVLAYSTVSQLGYMFLALgvgAYVAALFHLL--THAFFKALLFLgagsvihATGTRDIRKMGGL---RKKMPITAITFL 374

                       250       260
                ....*....|....*....|.
gi 37780951 246 LTLLSLAGLPPLTGFLPKWLI 266
Cdd:COG1009 375 IGALSLAGIPPFAGFFSKEAI 395
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.27e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 59.29  E-value: 1.27e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   50 PRAIEAATKYFLVQAAASTLMLFSST----INAWHTGQWDIAQL----TYPPACLLLTTAIAT---KLGLAPLHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIALAlitsPSLGLALALVFVIAGiafKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  119 LQGSSLTTALLL*T*MKLPPTTL---LLITSHSLNPT----LLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMM 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  192 I--IIAYNPKLTLLTFY--TYILMTASIF-------LTMNTTNISKLSTLmtsWTKTPMLNTTLMLTLLSLAGLPPLTGF 260
Cdd:PRK02504 317 IglVAGTEAGYASMVFYllAYLFMNLGAFacvilfsLRTGTDQISDYAGL---YQKDPLLTLGLSLCLLSLGGIPPLAGF 393


                 ...
gi 37780951  261 LPK 263
Cdd:PRK02504 394 FGK 396
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 48-298 4.02e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 54.59  E-value: 4.02e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   48 HHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQLT----------------YPPACLLLTTAIAT-----KL 106
Cdd:PRK12667 158 DRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNMADLSakirglsfpltgglagNPPLALGVALALALwaftiKA 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  107 GLAPLHFWFPEV-----------LQG---SSLTTALLL*T*MKLPPTTLLLITSHSLNPTLLTTMSImSITLGGWMGLNQ 172
Cdd:PRK12667 238 AIFPNHFWLPDAhpaapspvsamLSGlvvNVGAYAIIRFLYTIFGISPSLIDFRAALSPILIILGAV-SAIIGALMMVVQ 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  173 TQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYIL----------MTASIFL-TMNTTNISKLSTLMtswTKTPMLN 241
Cdd:PRK12667 317 KDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVFIhAAGTRDIDELAGLG---RKMPIAS 393

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 37780951  242 TTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAY 298
Cdd:PRK12667 394 FAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWY 450
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 7.52e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 53.95  E-value: 7.52e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   33 LEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQLTY----------PPACLLLTTA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVkmsenptvvaKIALALFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  102 IATKLGLAPLHFW----FPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSLNPT----LLTTMSIMSITLGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWlpdaYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  174 QTRKVLA*SSISYLGWMMI-----IIAYNPklTLLTFYTYILMTASIFLTMN--------------------TTNISKLS 228
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgvgLAALGD--PAMASYGEIALAGGIYHIVNhalykallfltagaviyetgTRNLNELG 387

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 37780951  229 TLMTswtKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 388 GLAR---TMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 55-263 1.89e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.54  E-value: 1.89e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   55 AATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL-TYPPACLLLTTAIA-------TKLGLAPLHFWFPEVLQGSSLTT 126
Cdd:PRK12644 158 AALQALLVTTAGGLAMLVGIIILGQAAGTYRLSELlADPPTGPAVSVAVVlilvgalSKSAIVPFHFWLPGAMAAPTPVS 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  127 ALLL*T*M---------KLPPTtllLITSHSLNPTLLTtMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYN 197
Cdd:PRK12644 238 AYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIG 313

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 37780951  198 PKLTLLTFYTYI----LMTASIFLTM-------NTTNISKLSTLmtsWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 314 TRDAALAGLAMLlahaLFKAALFLVVgiidhstGTRDIRKLSGL---GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-195 3.00e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 48.54  E-value: 3.00e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  38 LSIIPM---ISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQW-----DIAQLTYPPA-----CLLLTTAIAT 104
Cdd:COG1008 142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951 105 KLGLAPLHFWFPEVLQGSSlttalll*t*mklPPTTLLLI---------------------TSHSLNPTLLtTMSIMSIT 163
Cdd:COG1008 222 KVPMFPFHTWLPDAHVEAP-------------TAGSVLLAgvllkmggygllrfalplfpeASAYFAPLLA-ALGVIGII 287

                       170       180       190
                ....*....|....*....|....*....|..
gi 37780951 164 LGGWMGLNQTQTRKVLA*SSISYLGWMMIIIA 195
Cdd:COG1008 288 YGALVALAQTDLKRLIAYSSVSHMGFVLLGIF 319
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-266 3.46e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 48.40  E-value: 3.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951    50 PRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQW----DIAQLTYPPAC-----LLLTTAIATKLGLAPLHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   120 QGSSLTTALLL*T*MKLPPTTLLLI-------TSHSLNPtLLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   193 IIAYNPKL----TLLTFYTYILMTASIFLT-------MNTTNISKLSTLmtsWTKTPMLNTTLMLTLLSLAGLPPLTGFL 261
Cdd:TIGR01972 311 GIFSFNELgisgAVFQMISHGLITAALFLLvgvlyerAHTRDIAKYGGL---ANKMPVLAAFFMLFAMASLGLPGTSGFV 387


                  ....*
gi 37780951   262 PKWLI 266
Cdd:TIGR01972 388 GEFLI 392
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 3.14e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 45.59  E-value: 3.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   48 HHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQLTYPPACL--------------LLTTAIATKLGLAPLHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELIenikghplflitliLIFIGAAAKSAQGPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  114 WFPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSLNPT-----LLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  189 WMMIIIAYNPK--------------LTLLTFYTYILMTASIFLTMNTT-NISKLSTLMTswtKTPMLNTTLMLTLLSLAG 253
Cdd:PRK12649 316 YLMTMYGYTTYhepglgvaaatfhlLNHATFKACLFLVAGIVAHEAATrDIRKLGGLRK---EMPITFIVASIAALAMAG 392

                        250
                 ....*....|
gi 37780951  254 LPPLTGFLPK 263
Cdd:PRK12649 393 IPPLNGFLSK 402
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-266 9.57e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 44.14  E-value: 9.57e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   91 YPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSLNPT-----LLTTMSIMSITLG 165
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTG 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  166 GWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYI----LMTASIFLT-------MNTTNISKLSTLmtsW 234
Cdd:PRK12647 274 ALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVagiidheTGTRDITKLGGL---R 350

                        170       180       190
                 ....*....|....*....|....*....|..
gi 37780951  235 TKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12647 351 RAMPITAAAALLAALSMAGLPPLFGFLAKELI 382
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-296 1.51e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.57  E-value: 1.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  152 TLLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLTLLTFYTYI----LMTASIFLTM-------N 220
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSgsisyhfG 359

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 37780951  221 TTNISKLSTLmtsWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRL 296
Cdd:PRK12662 360 TTKLEDCLNL---WKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-195 1.68e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.10  E-value: 1.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   55 AATKYFLVQAAASTLMLFSSTINAWHTGQ--WDIAQLT---YPPACLLLT-----TAIATKLGLAPLHFWFPEVL-QGSS 123
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 37780951  124 LTTALLL*T*MKLPPTTL------LLITSHSLNPTLLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIA 195
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIA 295
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 72-311 1.33e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 40.45  E-value: 1.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   72 FSSTINAWHTGqwDIAQLTYPpaCLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MkLPPTTLLLITSHSL-- 149
Cdd:MTH00020 194 FSSVFNMVVSA--PSSDITLI--CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATM-VTAGVFLLIRSSPLfe 268

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  150 -NPTLLTTMSI---MSITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIA-YNPKLTLLTFYTYILMTASIFLTMNTT-- 222
Cdd:MTH00020 269 qAPLALIIVTIvgsLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGlSHYSISLFHLMNHAFFKALLFLSAGSVih 348

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  223 ------NISKLSTLMTSwtkTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQE-MTTTTMIISMASLLGLFFYLR 295
Cdd:MTH00020 349 alsdeqDMRKMGGLISF---LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYyLIFAYWLGCFSALLTAFYSIR 425

                        250
                 ....*....|....*.
gi 37780951  296 LAYCSTITlppNPSSK 311
Cdd:MTH00020 426 LIYLTFLS---NTNLK 438
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-195 1.74e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 40.19  E-value: 1.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   38 LSIIPM---ISKSHHPRAIEAATKYFLVQAAASTLMLFS----STINAWHTGQWDIAQLTYPPACLLLTT--------AI 102
Cdd:PRK05846 142 AMLIPMyflIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  103 ATKLGLAPLHFWFPEV-LQGSSLTTALLL*T*MKLPPTTLLLI-------TSHSLNPtLLTTMSIMSITLGGWMGLNQTQ 174
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAhVQAPTAGSVLLAGILLKMGAYGLLRFslplfpdASHEFAP-IIITLGVIAIIYGALVALAQTD 300

                        170       180
                 ....*....|....*....|.
gi 37780951  175 TRKVLA*SSISYLGWMMIIIA 195
Cdd:PRK05846 301 IKKLIAYSSISHMGFVTLGIF 321
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-116 1.93e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 39.91  E-value: 1.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   20 TITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYF---------------LVQAAASTLM------LFSSTINA 78
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMgdgemaILWTELLK 203

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 37780951   79 wHTGQWDIAQLTYPPACLLLttAIATKLGLAPLHFWFP 116
Cdd:PRK06458 204 -HASLLDPTLMKLAFVFLLI--GFGTKVGLFPMHAWLP 238
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
152-308 2.48e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.63  E-value: 2.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  152 TLLTTMSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYNPKLT----LLTFYTYILMTASIFL-------TMN 220
Cdd:PRK06277 267 GVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLgagivsyRTK 346

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  221 TTNISKLSTLMTSwtkTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRLAYcs 300
Cdd:PRK06277 347 TSNLRKLGGLLPV---MPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY-- 421


                 ....*...
gi 37780951  301 TITLPPNP 308
Cdd:PRK06277 422 LIYLKPKP 429
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-268 4.06e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.17  E-value: 4.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  111 LHFWFPEVLQGSSLTTALLL*T*MkLPPTTLLLITSHSLNPTLLTTMSIMSIT------LGGWMGLNQTQTRKVLA*SSI 184
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATM-VTAGVFLMIRSFPLFEKAPLTLLIITIFgaltafFAATVGLVQNDLKKVIAYSTC 322

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  185 SYLGWMMIIIAY--NPKLTLLTFYTYILMTASIFL---------TMNTTNISKLSTLMTSwtkTPMLNTTLMLTLLSLAG 253
Cdd:MTH00032 323 SQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS---IPFTYTMMLIGSFSIMG 399

                        170
                 ....*....|....*
gi 37780951  254 LPPLTGFLPKWLITQ 268
Cdd:MTH00032 400 LPYLTGFYSKDLILE 414
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 157-300 4.08e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 38.86  E-value: 4.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  157 MSIMSITLGGWMGLNQTQTRKVLA*SSISYLGWMMIIIAYN-PKLTLLTFYTYILMTASIFLT--------MNTTNISKL 227
Cdd:MTH00209 245 LGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNqPELAFFHLITHALFKALLFICagniihshGHSQDIRMV 324

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 37780951  228 STLmtsWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASL-LGLFFYLRLAYCS 300
Cdd:MTH00209 325 GNL---WYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTsLTAAYSMRLSYFS 395
PRK12650 PRK12650
DUF4040 family protein;
97-263 5.05e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.87  E-value: 5.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   97 LLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLLITS--HSLNPT---LLTTMSIMSITLGGWMGLN 171
Cdd:PRK12650 213 LIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALMGAVFAVQ 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  172 QTQTRKVLA*SSISYLGWM--MIIIAYNPKLTLLTFYT--YILMTASIFLTMN-------TTNISKLSTLmtsWTKTPML 240
Cdd:PRK12650 293 KTDLKKLTAYSTVSQLGWIvaTIGVGTPFALTAAVVHTlaHALFKSSLFMLIGvvdhqagTRDIRRLGSL---WRRMPFT 369

                        170       180
                 ....*....|....*....|...
gi 37780951  241 NTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 370 FVSVTIAALSMAAVPPLFGFVSK 392
PRK12646 PRK12646
DUF4040 family protein;
91-296 5.17e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 38.58  E-value: 5.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   91 YPPACLLLTTAIATKLGLAPLHFWFPEVLQGSSLTTALLL*T*MKLPPTTLLLITSHSLNPT-----LLTTMSIMSITLG 165
Cdd:PRK12646 209 FIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFG 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  166 GWMGLNQTQTRKVLA*SSISYLGWMMIII------AYNPKLTLLTFYTYILMtASIFLTMN------------------- 220
Cdd:PRK12646 289 SITALKQWDLKGILAYSTISQLGMIMAMVgigggyAQHQQDAIASIYVFVLF-AALFHLMNhaifkcalfmgvgiidhea 367

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  221 -TTNISKLSTLMTSWtktPMLNTTLMLTLLSLAGLPPLTGFLPKWLI------TQELIKQEMTTTTMIISM---ASLLGL 290
Cdd:PRK12646 368 gTRDIRILSGMRQLF---PKMNLVMTIAALSMAGVPFLNGFLSKEMFldaltqTGQLSQFSLISMIIIVFIgviASIFTF 444


                 ....*.
gi 37780951  291 FFYLRL 296
Cdd:PRK12646 445 TYALYM 450
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 58-296 7.58e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 38.01  E-value: 7.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951   58 KYFLVQAAASTL------MLFS--STINAWHTGQwDIAQLTYPPACLLLTTAI------ATKLGLAPLHFWFPevlqGSS 123
Cdd:PRK07691 162 KYVLINVVSSAFfvvavaILYSvvGTLNMADISV-KIAELSAGQTGLITVVAIlflfvfATKAGLFPLYFWLP----GSY 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  124 LTtalll*t*mklPPT--------------------TLLLITSHSLNPT--LLTTMSIMSITLGGWMGLNQTQTRKVLA* 181
Cdd:PRK07691 237 YA-----------PPIaiaalfgalltkvgvyaiarTFTLFFSHDTSFThyLILILALLTIIFGVIGAVAYFDIKKIIIY 305

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37780951  182 SSISYLGWMMIIIAYNPKLTLL--TFYT--YILMTASIFLTM-------NTTNISKLSTLMTSWtktPMLNTTLMLTLLS 250
Cdd:PRK07691 306 NIMIAVGVILVGVAMMTESGMIgaIYYLihDMIVKAALFLLIgimikitGTTDLKKMGGLIKRY---PVLGWMFFIAALS 382

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 37780951  251 LAGLPPLTGFLPKWLITQELIKQEMTTTTMIISMASLLGLFFYLRL 296
Cdd:PRK07691 383 LAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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