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Conserved domains on  [gi|33469540|gb|AAQ19795|]
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cytochrome b, partial (mitochondrion) [Tetrix cubulata]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 1-144 4.69e-88

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 260.48  E-value: 4.69e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00156 130 FWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 209

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00156 210 FHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-144 4.69e-88

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 260.48  E-value: 4.69e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00156 130 FWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 209

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00156 210 FHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-144 6.07e-43

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 145.70  E-value: 6.07e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540   1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFVIAALTMIHLLFLHQSGSNNPLG----MNSN 75
Cdd:COG1290 151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEK 230

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 33469540  76 SEKIPFHPFFSIKDSITMLLMLMVLMLISLMYPyiMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:COG1290 231 VDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-67 4.65e-29

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 104.76  E-value: 4.65e-29
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 33469540   1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSN 67
Cdd:cd00284 134 YWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-65 1.42e-25

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 95.53  E-value: 1.42e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 33469540     1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSG 65
Cdd:pfam00033 125 YWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-144 4.69e-88

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 260.48  E-value: 4.69e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00156 130 FWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 209

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00156 210 FHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
CYTB MTH00119
cytochrome b; Provisional
 1-144 1.45e-80

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 242.11  E-value: 1.45e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00119 141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00119 221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284
CYTB MTH00191
cytochrome b; Provisional
 1-144 6.57e-80

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 239.82  E-value: 6.57e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00191 137 FWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIP 216

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00191 217 FHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280
CYTB MTH00131
cytochrome b; Provisional
 1-144 2.20e-79

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 239.17  E-value: 2.20e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00131 140 FWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKIS 219

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00131 220 FHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00145
cytochrome b; Provisional
 1-144 1.15e-77

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 234.80  E-value: 1.15e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00145 141 FWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVP 220

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00145 221 FHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS 284
CYTB MTH00100
cytochrome b; Provisional
 1-144 1.97e-77

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 234.15  E-value: 1.97e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00100 140 FWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIP 219

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00100 220 FHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00074
cytochrome b; Provisional
 1-144 7.26e-77

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 232.65  E-value: 7.26e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00074 141 FWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVP 220

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00074 221 FHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS 284
CYTB MTH00016
cytochrome b; Validated
 1-144 4.08e-76

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 230.72  E-value: 4.08e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00016 141 FWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVP 220

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00016 221 FHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284
CYTB MTH00034
cytochrome b; Validated
 1-144 1.03e-71

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 219.58  E-value: 1.03e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00034 140 FWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVP 219

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00034 220 FHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283
CYTB MTH00224
cytochrome b; Provisional
 1-144 6.11e-62

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 194.37  E-value: 6.11e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00224 141 FWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIP 220

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00224 221 FHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284
CYTB MTH00053
cytochrome b; Provisional
 1-144 4.19e-61

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 192.23  E-value: 4.19e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00053 141 FWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIP 220

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00053 221 FHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284
CYTB MTH00022
cytochrome b; Validated
 1-144 6.30e-61

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 191.84  E-value: 6.30e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00022 139 FWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVS 218

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00022 219 FHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282
CYTB MTH00086
cytochrome b; Provisional
 1-144 2.06e-48

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 158.95  E-value: 2.06e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00086 129 FWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKIC 208

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33469540   81 FHPFFSIKDSITmLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00086 209 FGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271
CYTB MTH00033
cytochrome b; Provisional
 1-144 5.60e-46

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 153.56  E-value: 5.60e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIP 80
Cdd:MTH00033 137 FWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTA 216

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 33469540   81 FHPFFSIKDsITMLLMLMVLMLISLMYPYI---MGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00033 217 FHVYFTIKD-ILGFLILFGVFVIIGIEPRIetlLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRS 282
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-144 6.07e-43

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 145.70  E-value: 6.07e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540   1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFVIAALTMIHLLFLHQSGSNNPLG----MNSN 75
Cdd:COG1290 151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEK 230

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 33469540  76 SEKIPFHPFFSIKDSITMLLMLMVLMLISLMYPyiMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:COG1290 231 VDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
CYTB MTH00046
cytochrome b; Validated
 1-144 6.91e-35

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 123.55  E-value: 6.91e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPL-GMNSNSEKI 79
Cdd:MTH00046 131 YWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLfSSNGYSDVV 210

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 33469540   80 PFHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:MTH00046 211 YFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRS 275
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-67 4.65e-29

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 104.76  E-value: 4.65e-29
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 33469540   1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSN 67
Cdd:cd00284 134 YWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-65 1.42e-25

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 95.53  E-value: 1.42e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 33469540     1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSG 65
Cdd:pfam00033 125 YWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-91 4.95e-23

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 88.45  E-value: 4.95e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33469540     1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLHF-ILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKI 79
Cdd:pfam13631  55 GTGLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGV 134

                          90
                  ....*....|..
gi 33469540    80 PFHPFFSIKDSI 91
Cdd:pfam13631 135 PFWPVFAVKMLL 146
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 68-144 6.40e-21

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 82.31  E-value: 6.40e-21
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 33469540  68 NPLGMNSNSEKIPFHPFFSIKDSITMLLMLMVLMLISLMYPYIMGDPDNLIPANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRA 77
petB CHL00070
cytochrome b6
 1-70 9.38e-11

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 57.42  E-value: 9.38e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFVIAALTMIHLLFLHQSGSNNPL 70
Cdd:CHL00070 145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
119-144 1.81e-10

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 54.02  E-value: 1.81e-10
                          10        20
                  ....*....|....*....|....*.
gi 33469540   119 PANPLITPPHIQPEWHFLFAYAILRS 144
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRS 26
PRK03735 PRK03735
cytochrome b6; Provisional
 1-70 5.31e-10

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 55.10  E-value: 5.31e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 33469540    1 FWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFVIAALTMIHLLFLHQSGSNNPL 70
Cdd:PRK03735 153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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