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Conserved domains on  [gi|37551451|gb|AAQ93103|]
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zinc finger-like [Vaccinia virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02926 super family cl31519
zinc finger-like protein; Provisional
 6-80 1.16e-39

zinc finger-like protein; Provisional


The actual alignment was detected with superfamily member PHA02926:

Pssm-ID: 165237 [Multi-domain]  Cd Length: 242  Bit Score: 130.95  E-value: 1.16e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 37551451    6 YYINITKINPHLANQFRAWKKRIAGRDYMTNLSRDTGIQQSKLTETIRNCQKNRNIYGLYIHYNLVIN----WITDVII 80
Cdd:PHA02926  43 YYINITKINPHLANQFRAWKKRIAGRDYMTNLSRDTGIQQSKLTETIRNCQKNRNIYGLYIHYNLVINvvidWITDVIV 121
 
Name Accession Description Interval E-value
PHA02926 PHA02926
zinc finger-like protein; Provisional
 6-80 1.16e-39

zinc finger-like protein; Provisional


Pssm-ID: 165237 [Multi-domain]  Cd Length: 242  Bit Score: 130.95  E-value: 1.16e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 37551451    6 YYINITKINPHLANQFRAWKKRIAGRDYMTNLSRDTGIQQSKLTETIRNCQKNRNIYGLYIHYNLVIN----WITDVII 80
Cdd:PHA02926  43 YYINITKINPHLANQFRAWKKRIAGRDYMTNLSRDTGIQQSKLTETIRNCQKNRNIYGLYIHYNLVINvvidWITDVIV 121
KilA-N pfam04383
KilA-N domain; The amino-terminal module of the D6R/N1R proteins defines a novel, conserved ...
 7-78 1.76e-04

KilA-N domain; The amino-terminal module of the D6R/N1R proteins defines a novel, conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. The KilA-N domain family also includes the previously defined APSES domain. The KilA-N and APSES domains may also share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease.


Pssm-ID: 367917  Cd Length: 107  Bit Score: 36.92  E-value: 1.76e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 37551451     7 YINITKINPHLA---NQFRAWKKRIAGRDYMTNLSRDTGIQQSKLTETIRNcqKNRNIYGLYIHYNLVIN---WITDV 78
Cdd:pfam04383  17 YINATKLCKAAGektKRFRNWLRLESTKELIEELEEENNIPKIITIIGRKG--KGGRLQGTYVHPDLALAiasWISPE 92
 
Name Accession Description Interval E-value
PHA02926 PHA02926
zinc finger-like protein; Provisional
 6-80 1.16e-39

zinc finger-like protein; Provisional


Pssm-ID: 165237 [Multi-domain]  Cd Length: 242  Bit Score: 130.95  E-value: 1.16e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 37551451    6 YYINITKINPHLANQFRAWKKRIAGRDYMTNLSRDTGIQQSKLTETIRNCQKNRNIYGLYIHYNLVIN----WITDVII 80
Cdd:PHA02926  43 YYINITKINPHLANQFRAWKKRIAGRDYMTNLSRDTGIQQSKLTETIRNCQKNRNIYGLYIHYNLVINvvidWITDVIV 121
PHA02929 PHA02929
N1R/p28-like protein; Provisional
 7-77 4.69e-06

N1R/p28-like protein; Provisional


Pssm-ID: 222944 [Multi-domain]  Cd Length: 238  Bit Score: 42.46  E-value: 4.69e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 37551451    7 YINITKINPHLANQFRAWKKRIAGRDYMTNLSRDTGIQQSKLTETIRNCQKNRNIYGLYIHYNL---VINWITD 77
Cdd:PHA02929  28 YINITKLCKPMKKSFCNWKNLKRSRQIIINISIEENIKVDKLSFRIYKSKYTKQIHGVFIHPKLlkyVLNWISE 101
KilA-N pfam04383
KilA-N domain; The amino-terminal module of the D6R/N1R proteins defines a novel, conserved ...
 7-78 1.76e-04

KilA-N domain; The amino-terminal module of the D6R/N1R proteins defines a novel, conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. The KilA-N domain family also includes the previously defined APSES domain. The KilA-N and APSES domains may also share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease.


Pssm-ID: 367917  Cd Length: 107  Bit Score: 36.92  E-value: 1.76e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 37551451     7 YINITKINPHLA---NQFRAWKKRIAGRDYMTNLSRDTGIQQSKLTETIRNcqKNRNIYGLYIHYNLVIN---WITDV 78
Cdd:pfam04383  17 YINATKLCKAAGektKRFRNWLRLESTKELIEELEEENNIPKIITIIGRKG--KGGRLQGTYVHPDLALAiasWISPE 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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