|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-355 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 718.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00119 25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00119 105 YGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHF 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00119 185 LLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLV 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00119 265 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPV 344
|
330 340 350
....*....|....*....|....*....|....*
gi 37574978 321 EHPFIAIGQLASLAYFSIILILIPITSSLENKILN 355
Cdd:MTH00119 345 EHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-350 |
1.06e-128 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 374.13 E-value: 1.06e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:COG1290 33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYlyKE----TWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFF 156
Cdd:COG1290 113 YGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFF 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 157 ALH-FLLPFMITSLVLIHLTFLHESGSNNPLGI----PSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNllGDPE 231
Cdd:COG1290 191 ALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPP 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 232 NFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANL 309
Cdd:COG1290 269 NYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFF 348
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 37574978 310 FILTWVGSQPVehPFIAIGQLASLAYFSIILILIPITSSLE 350
Cdd:COG1290 349 IVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-183 |
6.56e-88 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 263.07 E-value: 6.56e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:cd00284 16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSY--LYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:cd00284 96 YGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFAL 175
|
170 180
....*....|....*....|....*
gi 37574978 159 HFLLPFMITSLVLIHLTFLHESGSN 183
Cdd:cd00284 176 HFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-181 |
2.87e-77 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 235.74 E-value: 2.87e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:pfam00033 7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YG--SYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:pfam00033 87 YGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSL 166
|
170 180
....*....|....*....|...
gi 37574978 159 HFLLPFMITSLVLIHLTFLHESG 181
Cdd:pfam00033 167 HFLLPFILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
219-302 |
7.72e-12 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 62.89 E-value: 7.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 219 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAF-RPI 297
Cdd:TIGR01156 54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPV 128
|
....*
gi 37574978 298 SQLLF 302
Cdd:TIGR01156 129 ATTVF 133
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-355 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 718.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00119 25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00119 105 YGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHF 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00119 185 LLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLV 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00119 265 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPV 344
|
330 340 350
....*....|....*....|....*....|....*
gi 37574978 321 EHPFIAIGQLASLAYFSIILILIPITSSLENKILN 355
Cdd:MTH00119 345 EHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-355 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 655.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00131 24 PSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLY 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00131 104 YGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHF 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00131 184 LFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLV 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00131 264 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPV 343
|
330 340 350
....*....|....*....|....*....|....*
gi 37574978 321 EHPFIAIGQLASLAYFSIILILIPITSSLENKILN 355
Cdd:MTH00131 344 EHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-354 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 654.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00100 24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00100 104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00100 184 ILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLN 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00100 264 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPV 343
|
330 340 350
....*....|....*....|....*....|....
gi 37574978 321 EHPFIAIGQLASLAYFSIILILIPITSSLENKIL 354
Cdd:MTH00100 344 EHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-355 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 627.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00074 25 PSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00074 105 YGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHF 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00074 185 LLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLV 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00074 265 TPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPV 344
|
330 340 350
....*....|....*....|....*....|....*
gi 37574978 321 EHPFIAIGQLASLAYFSIILILIPITSSLENKILN 355
Cdd:MTH00074 345 EDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-345 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 601.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00191 21 PSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00191 101 YGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHF 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00191 181 LLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLV 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00191 261 TPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPV 340
|
330 340
....*....|....*....|....*
gi 37574978 321 EHPFIAIGQLASLAYFSIILILIPI 345
Cdd:MTH00191 341 EDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-342 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 599.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00156 14 PSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIY 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00156 94 YGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHF 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00156 174 LLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLV 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00156 254 TPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPV 333
|
330 340
....*....|....*....|..
gi 37574978 321 EHPFIAIGQLASLAYFSIILIL 342
Cdd:MTH00156 334 EEPYILTGQILTILYFLYFIIN 355
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-354 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 580.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00145 25 PVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00145 105 YGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHF 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00145 185 LLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMV 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00145 265 TPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPV 344
|
330 340 350
....*....|....*....|....*....|....
gi 37574978 321 EHPFIAIGQLASLAYFSIILIlIPITSSLENKIL 354
Cdd:MTH00145 345 EEPYETIGQVFTVLYFLFFLI-LPLVQKLWDNIL 377
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-355 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 570.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00034 24 PSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLY 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00034 104 YGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHF 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00034 184 LFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLV 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00034 264 TPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPV 343
|
330 340 350
....*....|....*....|....*....|....*
gi 37574978 321 EHPFIAIGQLASLAYFSIILILIPITSSLENKILN 355
Cdd:MTH00034 344 EYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-354 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 540.42 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00016 25 PSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00016 105 YGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHF 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00016 185 LLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLV 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00016 265 TPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPV 344
|
330 340 350
....*....|....*....|....*....|....
gi 37574978 321 EHPFIAIGQLASLAYFSiILILIPITSSLENKIL 354
Cdd:MTH00016 345 EPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLL 377
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-355 |
7.04e-175 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 490.76 E-value: 7.04e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00053 25 PSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00053 105 YGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHY 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00053 185 LLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLV 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00053 265 TPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPV 344
|
330 340 350
....*....|....*....|....*....|....*
gi 37574978 321 EHPFIAIGQLASLAYFSIILILIPITSSLENKILN 355
Cdd:MTH00053 345 EEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-355 |
1.30e-174 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 489.98 E-value: 1.30e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00022 23 PSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLY 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00022 103 YGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHF 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00022 183 LFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLV 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00022 263 TPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVV 342
|
330 340 350
....*....|....*....|....*....|....*
gi 37574978 321 EHPFIAIGQLASLAYFSIILILIPITSSLENKILN 355
Cdd:MTH00022 343 EEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-355 |
1.38e-162 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 459.39 E-value: 1.38e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00224 25 PNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00224 105 YGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHF 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00224 185 LLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLV 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00224 265 TPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPV 344
|
330 340 350
....*....|....*....|....*....|....*
gi 37574978 321 EHPFIAIGQLASLAYFSiILILIPITSSLENKILN 355
Cdd:MTH00224 345 EDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-351 |
3.30e-136 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 392.76 E-value: 3.30e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00033 21 PSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00033 101 YGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHY 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFS--PNLLGDPENFTPANP 238
Cdd:MTH00033 181 LLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANP 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 239 LVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQ 318
Cdd:MTH00033 261 LVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSA 340
|
330 340 350
....*....|....*....|....*....|....
gi 37574978 319 PV-EHPFIAIGQLASLAYFSIILILIPITSSLEN 351
Cdd:MTH00033 341 PAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-350 |
1.06e-128 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 374.13 E-value: 1.06e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:COG1290 33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYlyKE----TWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFF 156
Cdd:COG1290 113 YGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFF 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 157 ALH-FLLPFMITSLVLIHLTFLHESGSNNPLGI----PSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNllGDPE 231
Cdd:COG1290 191 ALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPP 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 232 NFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANL 309
Cdd:COG1290 269 NYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFF 348
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 37574978 310 FILTWVGSQPVehPFIAIGQLASLAYFSIILILIPITSSLE 350
Cdd:COG1290 349 IVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-342 |
4.78e-118 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 345.39 E-value: 4.78e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00086 13 SKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00086 93 MMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHF 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 161 LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGfMIMLLSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00086 173 LLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADPMM 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSkqrTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00086 252 SPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLV 328
|
330 340
....*....|....*....|..
gi 37574978 321 EHPFIAIGQLASLAYFSIILIL 342
Cdd:MTH00086 329 EYPFLFLSQIFSFIYFFLILLM 350
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-341 |
3.49e-88 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 269.16 E-value: 3.49e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISA--WWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARG 78
Cdd:MTH00046 13 PTNYSLnyYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 79 FYYGSYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:MTH00046 93 LYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 159 HFLLPFMITSLVLIHLTFLHESGSNNPLGIPSN-CDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPAN 237
Cdd:MTH00046 173 HICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEAD 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 238 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALAASVLILILSPFLHKSKqrtmAFRPISQLLFWALAANLFILTWVGS 317
Cdd:MTH00046 253 PLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGG 327
|
330 340
....*....|....*....|....
gi 37574978 318 QPVEHPFIAIGQLASLAYFSIILI 341
Cdd:MTH00046 328 CHPEYPYLLISQLFSVLMVLLLFI 351
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-183 |
6.56e-88 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 263.07 E-value: 6.56e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:cd00284 16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSY--LYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:cd00284 96 YGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFAL 175
|
170 180
....*....|....*....|....*
gi 37574978 159 HFLLPFMITSLVLIHLTFLHESGSN 183
Cdd:cd00284 176 HFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-181 |
2.87e-77 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 235.74 E-value: 2.87e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:pfam00033 7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YG--SYLYKETWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:pfam00033 87 YGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSL 166
|
170 180
....*....|....*....|...
gi 37574978 159 HFLLPFMITSLVLIHLTFLHESG 181
Cdd:pfam00033 167 HFLLPFILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
184-331 |
1.75e-55 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 178.22 E-value: 1.75e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 184 NPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 263
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 37574978 264 KLGGVLALAASVLILILSPFLHKSKQRTMaFRPISQLLFWALAANLFILTWVGSQPVEHPFIAIGQLA 331
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
235-335 |
2.17e-46 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 153.02 E-value: 2.17e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 235 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAFRPISQLLFWALAANLFILTW 314
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 37574978 315 VGSQPVEHPFIAIGQLASLAY 335
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
65-230 |
1.93e-45 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 153.17 E-value: 1.93e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 65 SLFFICIYLHIARGFYYGSYLYKE--TWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 142
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 143 GGFSVDNPTLTRFFALHF-LLPFMITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLSLSTLAL 221
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 37574978 222 FSPNLLGDP 230
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
10-186 |
4.47e-34 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 125.21 E-value: 4.47e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 10 FGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKE- 88
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 89 -TWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMI 166
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
170 180
....*....|....*....|
gi 37574978 167 TSLVLIHLTFLHESGSNNPL 186
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-186 |
4.30e-31 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 117.13 E-value: 4.30e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 1 PSNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:CHL00070 27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 81 YGSYLYKE--TWNTGTILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186
|
170 180
....*....|....*....|....*....
gi 37574978 159 H-FLLPFMITSLVLIHLTFLHESGSNNPL 186
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
219-302 |
6.86e-14 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 68.49 E-value: 6.86e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 219 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHK-SKQRTMAFRPI 297
Cdd:CHL00058 54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRPV 128
|
....*
gi 37574978 298 SQLLF 302
Cdd:CHL00058 129 ATTVF 133
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
219-302 |
2.25e-12 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 64.43 E-value: 2.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 219 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAF-RPI 297
Cdd:COG5679 55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPV 129
|
....*
gi 37574978 298 SQLLF 302
Cdd:COG5679 130 ATAVF 134
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
219-302 |
7.72e-12 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 62.89 E-value: 7.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37574978 219 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILILSPFLHKSKQRTMAF-RPI 297
Cdd:TIGR01156 54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPV 128
|
....*
gi 37574978 298 SQLLF 302
Cdd:TIGR01156 129 ATTVF 133
|
|
|