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Conserved domains on  [gi|37575055|gb|AAQ93454|]
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cytochrome b, partial (mitochondrion) [Amazona leucocephala palmarum]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-199 1.86e-154

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 432.02  E-value: 1.86e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00119  25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00119 105 YGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHF 184

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:MTH00119 185 LLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHP 223
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-199 1.86e-154

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 432.02  E-value: 1.86e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00119  25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00119 105 YGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHF 184

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:MTH00119 185 LLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHP 223
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-183 7.96e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 259.22  E-value: 7.96e-89
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:cd00284  16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055  81 YGSY--LYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:cd00284  96 YGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFAL 175

                       170       180
                ....*....|....*....|....*
gi 37575055 159 HFLLPFMITSLVLIHLTFLHESGSN 183
Cdd:cd00284 176 HFLLPFIIAVIVILHLLFLHEQGSS 200
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-199 1.68e-82

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 249.71  E-value: 1.68e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:COG1290  33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055  81 YGSYlyKE----TWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFF 156
Cdd:COG1290 113 YGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFF 190

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 37575055 157 ALH-FLLPFMITSLVLIHLTFLHESGSNNPLGI----SSNCDKIPFHP 199
Cdd:COG1290 191 ALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHP 238
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-181 1.46e-78

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 232.66  E-value: 1.46e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055     1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    81 YG--SYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:pfam00033  87 YGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSL 166

                         170       180
                  ....*....|....*....|...
gi 37575055   159 HFLLPFMITSLVLIHLTFLHESG 181
Cdd:pfam00033 167 HFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-199 1.86e-154

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 432.02  E-value: 1.86e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00119  25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00119 105 YGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHF 184

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:MTH00119 185 LLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHP 223
CYTB MTH00100
cytochrome b; Provisional
 1-199 1.08e-138

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 392.08  E-value: 1.08e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00100  24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00100 104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF 183

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:MTH00100 184 ILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHP 222
CYTB MTH00156
cytochrome b; Provisional
 1-199 2.45e-138

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 390.30  E-value: 2.45e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00156  14 PSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00156  94 YGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHF 173

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:MTH00156 174 LLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHP 212
CYTB MTH00131
cytochrome b; Provisional
 1-199 2.29e-137

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 389.01  E-value: 2.29e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00131  24 PSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLY 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00131 104 YGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHF 183

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:MTH00131 184 LFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHP 222
CYTB MTH00074
cytochrome b; Provisional
 1-199 3.13e-132

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 375.94  E-value: 3.13e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00074  25 PSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00074 105 YGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHF 184

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:MTH00074 185 LLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHP 223
CYTB MTH00191
cytochrome b; Provisional
 1-199 5.46e-131

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 371.94  E-value: 5.46e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00191  21 PSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLY 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00191 101 YGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHF 180

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:MTH00191 181 LLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHP 219
CYTB MTH00145
cytochrome b; Provisional
 1-199 1.06e-126

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 361.92  E-value: 1.06e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00145  25 PVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00145 105 YGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHF 184

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:MTH00145 185 LLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHP 223
CYTB MTH00016
cytochrome b; Validated
 1-199 1.21e-121

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 348.98  E-value: 1.21e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00016  25 PSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00016 105 YGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHF 184

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:MTH00016 185 LLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHP 223
CYTB MTH00034
cytochrome b; Validated
 1-198 3.14e-119

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 342.84  E-value: 3.14e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00034  24 PSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLY 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00034 104 YGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHF 183

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFH 198
Cdd:MTH00034 184 LFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFH 221
CYTB MTH00224
cytochrome b; Provisional
 1-199 1.28e-100

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 295.68  E-value: 1.28e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00224  25 PNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00224 105 YGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHF 184

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:MTH00224 185 LLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHP 223
CYTB MTH00022
cytochrome b; Validated
 1-198 4.89e-100

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 293.92  E-value: 4.89e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00022  23 PSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLY 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00022 103 YGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHF 182

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFH 198
Cdd:MTH00022 183 LFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFH 220
CYTB MTH00053
cytochrome b; Provisional
 1-199 1.18e-98

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 290.45  E-value: 1.18e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00053  25 PSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00053 105 YGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHY 184

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:MTH00053 185 LLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHY 223
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-183 7.96e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 259.22  E-value: 7.96e-89
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:cd00284  16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055  81 YGSY--LYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:cd00284  96 YGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFAL 175

                       170       180
                ....*....|....*....|....*
gi 37575055 159 HFLLPFMITSLVLIHLTFLHESGSN 183
Cdd:cd00284 176 HFLLPFIIAVIVILHLLFLHEQGSS 200
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-199 1.68e-82

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 249.71  E-value: 1.68e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:COG1290  33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055  81 YGSYlyKE----TWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFF 156
Cdd:COG1290 113 YGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFF 190

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 37575055 157 ALH-FLLPFMITSLVLIHLTFLHESGSNNPLGI----SSNCDKIPFHP 199
Cdd:COG1290 191 ALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHP 238
CYTB MTH00033
cytochrome b; Provisional
 1-198 1.98e-82

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 249.47  E-value: 1.98e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00033  21 PSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLY 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00033 101 YGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHY 180

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFH 198
Cdd:MTH00033 181 LLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFH 218
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-181 1.46e-78

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 232.66  E-value: 1.46e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055     1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    81 YG--SYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:pfam00033  87 YGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSL 166

                         170       180
                  ....*....|....*....|...
gi 37575055   159 HFLLPFMITSLVLIHLTFLHESG 181
Cdd:pfam00033 167 HFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00086
cytochrome b; Provisional
 1-199 1.00e-77

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 236.37  E-value: 1.00e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00086  13 SKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLF 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00086  93 MMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHF 172

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 37575055  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:MTH00086 173 LLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGP 211
CYTB MTH00046
cytochrome b; Validated
 1-198 2.37e-52

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 171.32  E-value: 2.37e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISA--WWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARG 78
Cdd:MTH00046  13 PTNYSLnyYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRA 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   79 FYYGSYLYKETWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:MTH00046  93 LYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSV 172

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 37575055  159 HFLLPFMITSLVLIHLTFLHESGSNNPLGISSN-CDKIPFH 198
Cdd:MTH00046 173 HICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFH 213
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
65-199 1.63e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 132.75  E-value: 1.63e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    65 SLFFICIYLHIARGFYYGSYLYKE--TWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAW 142
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 37575055   143 GGFSVDNPTLTRFFALHF-LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHP 199
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWP 138
PRK03735 PRK03735
cytochrome b6; Provisional
 10-186 5.92e-36

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 125.21  E-value: 5.92e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   10 FGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKE- 88
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   89 -TWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMI 166
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 37575055  167 TSLVLIHLTFLHESGSNNPL 186
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-186 2.67e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 115.59  E-value: 2.67e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575055   81 YGSYLYKE--TWNTGIILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 37575055  159 H-FLLPFMITSLVLIHLTFLHESGSNNPL 186
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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