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Conserved domains on  [gi|51450245|gb|AAU02099|]
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cytochrome b, partial (mitochondrion) [Geochelone platynota]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-143 1.19e-104

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 303.36  E-value: 1.19e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    1 MATNLRKTHPMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 51450245   81 RNMHANGASLFFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWG 143
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-143 1.19e-104

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 303.36  E-value: 1.19e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    1 MATNLRKTHPMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 51450245   81 RNMHANGASLFFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWG 143
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-143 3.82e-63

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 191.81  E-value: 3.82e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245  10 PMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 51450245  90 LFFMCIYLHIGRGIYYGSY--LHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-143 1.41e-56

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 174.88  E-value: 1.41e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    19 LIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASLFFMCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 51450245    99 IGRGIYYG--SYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-143 2.54e-55

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 177.67  E-value: 2.54e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245  12 FKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASLF 91
Cdd:COG1290  20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 51450245  92 FMCIYLHIGRGIYYGSYlhKE----TWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:COG1290 100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-143 1.19e-104

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 303.36  E-value: 1.19e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    1 MATNLRKTHPMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 51450245   81 RNMHANGASLFFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWG 143
CYTB MTH00100
cytochrome b; Provisional
 3-143 1.84e-97

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 284.99  E-value: 1.84e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    3 TNLRKTHPMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRN 82
Cdd:MTH00100   2 TNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRY 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 51450245   83 MHANGASLFFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00100  82 LHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
CYTB MTH00131
cytochrome b; Provisional
 3-143 1.26e-96

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 283.08  E-value: 1.26e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    3 TNLRKTHPMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRN 82
Cdd:MTH00131   2 ASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRN 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 51450245   83 MHANGASLFFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00131  82 LHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWG 142
CYTB MTH00074
cytochrome b; Provisional
 1-143 3.62e-94

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 276.56  E-value: 3.62e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    1 MATNLRKTHPMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 51450245   81 RNMHANGASLFFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWG 143
CYTB MTH00191
cytochrome b; Provisional
 5-143 5.19e-92

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 270.63  E-value: 5.19e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    5 LRKTHPMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 51450245   85 ANGASLFFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWG 139
CYTB MTH00156
cytochrome b; Provisional
 12-143 3.16e-89

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 263.18  E-value: 3.16e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245   12 FKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASLF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 51450245   92 FMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWG 132
CYTB MTH00034
cytochrome b; Validated
 5-143 1.16e-87

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 260.02  E-value: 1.16e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    5 LRKTHPMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMH 84
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 51450245   85 ANGASLFFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWA 142
CYTB MTH00145
cytochrome b; Provisional
 1-143 3.46e-86

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 256.37  E-value: 3.46e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    1 MATNLRKTHPMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 51450245   81 RNMHANGASLFFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWG 143
CYTB MTH00016
cytochrome b; Validated
 1-143 2.93e-84

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 251.52  E-value: 2.93e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    1 MATNLRKTHPMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 51450245   81 RNMHANGASLFFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00224
cytochrome b; Provisional
 1-143 2.39e-74

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 226.34  E-value: 2.39e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    1 MATNLRKTHPMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 51450245   81 RNMHANGASLFFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00022
cytochrome b; Validated
 5-143 2.86e-72

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 220.73  E-value: 2.86e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    5 LRKTHPMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMH 84
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 51450245   85 ANGASLFFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWG 141
CYTB MTH00053
cytochrome b; Provisional
 1-142 3.26e-71

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 218.04  E-value: 3.26e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    1 MATNLRKTHPMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 51450245   81 RNMHANGASLFFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFW 142
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFW 142
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-143 3.82e-63

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 191.81  E-value: 3.82e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245  10 PMFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 51450245  90 LFFMCIYLHIGRGIYYGSY--LHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-143 1.41e-56

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 174.88  E-value: 1.41e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245    19 LIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASLFFMCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 51450245    99 IGRGIYYG--SYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-143 2.54e-55

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 177.67  E-value: 2.54e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245  12 FKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASLF 91
Cdd:COG1290  20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 51450245  92 FMCIYLHIGRGIYYGSYlhKE----TWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:COG1290 100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
CYTB MTH00033
cytochrome b; Provisional
 17-143 8.33e-54

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 173.59  E-value: 8.33e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245   17 NSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASLFFMCIY 96
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 51450245   97 LHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWA 139
CYTB MTH00086
cytochrome b; Provisional
 15-143 5.63e-47

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 155.10  E-value: 5.63e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245   15 INNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASLFFMC 94
Cdd:MTH00086   3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 51450245   95 IYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:MTH00086  83 LYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWA 131
CYTB MTH00046
cytochrome b; Validated
 11-142 2.39e-34

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 122.40  E-value: 2.39e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245   11 MFKTINNSLIDLPSPSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASL 90
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 51450245   91 FFMCIYLHIGRGIYYGSYLHKETWNTGIILLLLVMATAFMGYVLPWGQMSFW 142
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYW 132
PRK03735 PRK03735
cytochrome b6; Provisional
 34-142 9.49e-25

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 94.39  E-value: 9.49e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245   34 FGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASLFFMCIYLHIGRGIYYGSYLHKE- 112
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110
                 ....*....|....*....|....*....|.
gi 51450245  113 -TWNTGIILLLLVMATAFMGYVLPWGQMSFW 142
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 25-142 5.01e-21

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 84.39  E-value: 5.01e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51450245   25 PSNISAWWNFGSLLGTCLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASLFFMCIYLHIGRGIY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 51450245  105 YGSYL--HKETWNTGIILLLLVMATAFMGYVLPWGQMSFW 142
Cdd:CHL00070 107 TGGFKkpRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-143 5.64e-14

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 64.96  E-value: 5.64e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 51450245    89 SLFFMCIYLHIGRGIYYGSYLHKE--TWNTGIILLLLVMATAFMGYVLPWGQMSFWG 143
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTG 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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