|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-144 |
2.88e-102 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 296.31 E-value: 2.88e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00156 130 FWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 209
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00156 210 FHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-144 |
2.86e-47 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 156.87 E-value: 2.86e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPLG----LNSN 75
Cdd:COG1290 151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEK 230
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 76 IEKIPFHPYFTFKDSITFVImtsMLIMLCLLNPYL-LGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:COG1290 231 VDGVPFHPYYTVKDGFGFFV---FLGVFALLAFFFpINPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-114 |
7.46e-29 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 103.48 E-value: 7.46e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHF-VLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKI 79
Cdd:pfam13631 55 GTGLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGV 134
|
90 100 110
....*....|....*....|....*....|....*
gi 51979635 80 PFHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDP 114
Cdd:pfam13631 135 PFWPVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-67 |
8.04e-26 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 96.67 E-value: 8.04e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSN 67
Cdd:cd00284 134 YWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-144 |
2.88e-102 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 296.31 E-value: 2.88e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00156 130 FWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 209
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00156 210 FHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-144 |
1.17e-88 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 262.16 E-value: 1.17e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00191 137 FWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIP 216
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00191 217 FHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-144 |
2.09e-88 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 262.14 E-value: 2.09e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00119 141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00119 221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-144 |
6.42e-88 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 260.61 E-value: 6.42e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00145 141 FWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVP 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00145 221 FHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS 284
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-144 |
8.48e-88 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 260.38 E-value: 8.48e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00074 141 FWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVP 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00074 221 FHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS 284
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-144 |
6.69e-87 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 258.43 E-value: 6.69e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00131 140 FWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKIS 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00131 220 FHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 283
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-144 |
2.99e-84 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 251.48 E-value: 2.99e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00100 140 FWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIP 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00100 220 FHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-144 |
2.64e-82 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 246.51 E-value: 2.64e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00016 141 FWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVP 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00016 221 FHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-144 |
9.21e-79 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 237.30 E-value: 9.21e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00034 140 FWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVP 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00034 220 FHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-144 |
8.35e-69 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 212.09 E-value: 8.35e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00224 141 FWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIP 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00224 221 FHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-144 |
1.52e-68 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 211.48 E-value: 1.52e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00022 139 FWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVS 218
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00022 219 FHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-144 |
2.93e-67 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 208.02 E-value: 2.93e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00053 141 FWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIP 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00053 221 FHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-144 |
4.51e-53 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 170.89 E-value: 4.51e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00086 129 FWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKIC 208
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51979635 81 FHPYFTFKDSITFVIMTsMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00086 209 FGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-144 |
2.12e-48 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 159.72 E-value: 2.12e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKIP 80
Cdd:MTH00033 137 FWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTA 216
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 51979635 81 FHPYFTFKDSITFVIMTSMLIMLCLLN--PYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00033 217 FHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRS 282
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-144 |
2.86e-47 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 156.87 E-value: 2.86e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPLG----LNSN 75
Cdd:COG1290 151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEK 230
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 76 IEKIPFHPYFTFKDSITFVImtsMLIMLCLLNPYL-LGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:COG1290 231 VDGVPFHPYYTVKDGFGFFV---FLGVFALLAFFFpINPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-144 |
5.14e-39 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 134.73 E-value: 5.14e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNI-EKI 79
Cdd:MTH00046 131 YWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVV 210
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 51979635 80 PFHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00046 211 YFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRS 275
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-114 |
7.46e-29 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 103.48 E-value: 7.46e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHF-VLPFMIAAMAAIHLFFLHQTGSNNPLGLNSNIEKI 79
Cdd:pfam13631 55 GTGLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGV 134
|
90 100 110
....*....|....*....|....*....|....*
gi 51979635 80 PFHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDP 114
Cdd:pfam13631 135 PFWPVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-67 |
8.04e-26 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 96.67 E-value: 8.04e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSN 67
Cdd:cd00284 134 YWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
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| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
68-144 |
2.13e-25 |
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Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 93.86 E-value: 2.13e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 51979635 68 NPLGLNSNIEKIPFHPYFTFKDSITFVIMTSMLIMLCLLNPYLLGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRA 77
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| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-65 |
9.88e-24 |
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Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 90.90 E-value: 9.88e-24
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTG 65
Cdd:pfam00033 125 YWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
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| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
119-144 |
6.03e-12 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 57.87 E-value: 6.03e-12
10 20
....*....|....*....|....*.
gi 51979635 119 PANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRS 26
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| petB |
CHL00070 |
cytochrome b6 |
1-70 |
6.66e-08 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 49.33 E-value: 6.66e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPL 70
Cdd:CHL00070 145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
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| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-70 |
9.21e-08 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 48.94 E-value: 9.21e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 51979635 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPL 70
Cdd:PRK03735 153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
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| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
100-143 |
2.01e-04 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 39.21 E-value: 2.01e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 51979635 100 LIMLCLLNPYLLGDPdnfvpANPLVTPVHIQPEWYFLFAYAILR 143
Cdd:CHL00058 51 NVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILR 89
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