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Conserved domains on  [gi|56387571|gb|AAV86174|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Pyrilia pulchra]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.29e-141

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 402.66  E-value: 8.29e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    1 MTPITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   81 TGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 56387571  321 TNPMIPTLTSLSILLLPLSPMILTTI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.29e-141

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 402.66  E-value: 8.29e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    1 MTPITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   81 TGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 56387571  321 TNPMIPTLTSLSILLLPLSPMILTTI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-298 2.19e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.41  E-value: 2.19e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  10 TLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASALVLF--------SSTIN--- 77
Cdd:COG1007 108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlag 187

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  78 -AQHTGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLST---------LMKLppTTLLLITSH 147
Cdd:COG1007 188 iAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATapkiaafaaLLRL--LVEAFPGLA 265

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571 148 SLSHILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKL----TLLAFFIYTLMTTSIFLTM---- 219
Cdd:COG1007 266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIllls 345

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571 220 ---------------NTTN---ALKLSTLMTSWTKTPmlnttlmltllslsglpPLTGFLPKWLIMQELIKQEMTTTTTI 281
Cdd:COG1007 346 rkggeaeeiedlaglARRSpllALAMTIFLLSLAGIP-----------------PTAGFFGKFYVFSAAVEAGLYWLAVI 408

                       330
                ....*....|....*..
gi 56387571 282 ISMLSLLGLFFYLRLAY 298
Cdd:COG1007 409 AVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 6.89e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 88.14  E-value: 6.89e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    23 SNHWAMAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQLTYPPACT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    97 ------LLTIAIAIKLGLTPFHFWFPEVLQGSPLT-TAMLLSTLMKLPP-----TTLLLITSHSLSHILLTTMSIMSIAL 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   165 GGWMGLNQTQTRKIMAFSSISHLGWMMITI----TYNPKLTLLAFFIYTLMTTSIFL--------TMNTTNALKLSTLmt 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 56387571   233 sWTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQ 268
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-297 4.02e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 85.00  E-value: 4.02e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    11 LSILLGTTITTTSNHWAMAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQL 89
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDL 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    90 -----TYPPACTLLTI-------AIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLS------- 150
Cdd:TIGR01770 189 llflsNGMLNISLLLLgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILfgfseaw 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   151 HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKL----TLLAFFIYTLMTTSIFLTM------N 220
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLsllrsyK 348

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56387571   221 TTNALKLSTLMTSWTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 349 DEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.29e-141

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 402.66  E-value: 8.29e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    1 MTPITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   81 TGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 56387571  321 TNPMIPTLTSLSILLLPLSPMILTTI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-326 2.69e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 327.65  E-value: 2.69e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    1 MTPITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   81 TGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....*.
gi 56387571  321 TNPMIP 326
Cdd:MTH00070 321 TNNLLS 326
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-324 1.18e-109

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 323.29  E-value: 1.18e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    1 MTPITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   81 TGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHiLLTTMSIM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPT-LLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319


                 ....
gi 56387571  321 TNPM 324
Cdd:MTH00135 320 QLTL 323
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-326 6.23e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 295.99  E-value: 6.23e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    1 MTPITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   81 TGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITL-PPNPSSKMKQWSTKN 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMfPSTNNMKMKWQFENT 320


                 ....*..
gi 56387571  320 PTNPMIP 326
Cdd:MTH00105 321 KPMTLLP 327
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-326 1.80e-80

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 249.12  E-value: 1.80e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    1 MTPITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   81 TGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320


                 ....*.
gi 56387571  321 TNPMIP 326
Cdd:MTH00200 321 SNLLVG 326
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-326 1.92e-74

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 233.67  E-value: 1.92e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    1 MTPITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   81 TGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIM 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPML 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320


                 ....*.
gi 56387571  321 TNPMIP 326
Cdd:MTH00041 321 ITVYGV 326
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-325 9.88e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 161.53  E-value: 9.88e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    1 MTPITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   81 tgqwdITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLlitSHSLSHILLTTMSIM 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS 312


                 ....*
gi 56387571  321 TNPMI 325
Cdd:MTH00160 313 LILNF 317
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-318 6.38e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 140.79  E-value: 6.38e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   13 ILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITqltyp 92
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   93 pacTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLL-LITSHSLSHILLTTMSIMSIALGGWMGLN 171
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLsNFLDLYWLAYLLCVISVLSALVGSIGGLN 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  172 QTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTlMTSWTKTPMLNTTLMLTLLSL 251
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLSIISLLLSL 243

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56387571  252 SGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTK 318
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNS 310
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 12-310 2.54e-37

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 136.45  E-value: 2.54e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   12 SILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTInaqhtgQWDITQLTY 91
Cdd:MTH00011  14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLK 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   92 PPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIMSIALGGWMGLN 171
Cdd:MTH00011  88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  172 QTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPMLNTTLMLTLLSL 251
Cdd:MTH00011 168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 56387571  252 SGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYcSTITLPPNPSS 310
Cdd:MTH00011 248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-313 1.49e-33

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 126.33  E-value: 1.49e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   11 LSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTgqwditqLT 90
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   91 YPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLshILLTTMSIMSIALGGWMGL 170
Cdd:MTH00197  78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSF--MGLLICSVLSSLIGGIGGM 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  171 NQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPMLNTTLMLTLLS 250
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 56387571  251 LSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMK 313
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 1.71e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 96.64  E-value: 1.71e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   13 ILLGTTITTTSNHWAMAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASALVLFS-------------STINA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   79 QHTGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLppTTLLLITSHSLSHILLTTMS 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKL--GIFSILVSIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  159 IMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNP----KLTLLAFFIYTLMTTSIFLTMNTTNALK--LSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56387571  233 SWTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-298 2.19e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.41  E-value: 2.19e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  10 TLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASALVLF--------SSTIN--- 77
Cdd:COG1007 108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlag 187

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  78 -AQHTGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLST---------LMKLppTTLLLITSH 147
Cdd:COG1007 188 iAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATapkiaafaaLLRL--LVEAFPGLA 265

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571 148 SLSHILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKL----TLLAFFIYTLMTTSIFLTM---- 219
Cdd:COG1007 266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIllls 345

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571 220 ---------------NTTN---ALKLSTLMTSWTKTPmlnttlmltllslsglpPLTGFLPKWLIMQELIKQEMTTTTTI 281
Cdd:COG1007 346 rkggeaeeiedlaglARRSpllALAMTIFLLSLAGIP-----------------PTAGFFGKFYVFSAAVEAGLYWLAVI 408

                       330
                ....*....|....*..
gi 56387571 282 ISMLSLLGLFFYLRLAY 298
Cdd:COG1007 409 AVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 6.89e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 88.14  E-value: 6.89e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    23 SNHWAMAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQLTYPPACT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    97 ------LLTIAIAIKLGLTPFHFWFPEVLQGSPLT-TAMLLSTLMKLPP-----TTLLLITSHSLSHILLTTMSIMSIAL 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   165 GGWMGLNQTQTRKIMAFSSISHLGWMMITI----TYNPKLTLLAFFIYTLMTTSIFL--------TMNTTNALKLSTLmt 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 56387571   233 sWTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQ 268
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-297 4.02e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 85.00  E-value: 4.02e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    11 LSILLGTTITTTSNHWAMAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQL 89
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDL 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    90 -----TYPPACTLLTI-------AIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLS------- 150
Cdd:TIGR01770 189 llflsNGMLNISLLLLgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILfgfseaw 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   151 HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKL----TLLAFFIYTLMTTSIFLTM------N 220
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLsllrsyK 348

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56387571   221 TTNALKLSTLMTSWTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 349 DEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.07e-16

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 80.64  E-value: 1.07e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   14 LLGTTITTTSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQL--- 89
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   90 -----TYPP----ACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKL----PPTTLLLITSHSLSH---IL 153
Cdd:PRK05777 193 ladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEdwqQV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  154 LTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKL----TLLAFFIYTLMTTSIF--LTMNTTNALKL 227
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFgvISLLRRKGGEA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 56387571  228 STLmTSWT----KTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRL 296
Cdd:PRK05777 353 ESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 2-267 3.97e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 78.91  E-value: 3.97e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    2 TPITKLISTLSILLgttiTTTSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASALVLFSSTINAQH 80
Cdd:MTH00199  99 SPILILIVALGSLL----LVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGL 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   81 TGQWDITQLTYPPAC----TLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTt 156
Cdd:MTH00199 175 TGETSIQGINSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC- 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  157 mSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNP----KLTLLAFFIYTLMTT---SIFLTMNTTNALKLST 229
Cdd:MTH00199 254 -AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEV 332

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 56387571  230 LMTSwTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIM 267
Cdd:MTH00199 333 SGLS-RKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-296 3.35e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 72.87  E-value: 3.35e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  30 WAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQL-----TYPP-----ACTLLT 99
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaELDPglllaAFALLL 212

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571 100 IAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLM-KLPP-------TTLLLITSHSLSHILLTTMSIMSIALGGWMGLN 171
Cdd:COG0651 213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvlTLLFGADPALFLGTLLLVLGLLTMLVGALGALA 292

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571 172 QTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIY----TLMTTSIFLT----MNTTNALKLSTLMTSWTKTPMLNTT 243
Cdd:COG0651 293 QRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAA 372

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|...
gi 56387571 244 LMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRL 296
Cdd:COG0651 373 FLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-210 5.55e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 72.97  E-value: 5.55e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    3 PITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAI---------EAATKYFLVQAAASALVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   74 STINAQHTGQWDI--TQLTYPPACT------------LLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLppT 139
Cdd:MTH00198 267 CALYFGFTGNEGMlgTILSATLETTnielrqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 56387571  140 TLLLITSHSLSHILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTL 210
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAV 415
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-220 8.78e-13

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 68.92  E-value: 8.78e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   50 PRAIEAATKYFLVQAAASALVLFSST----INAQHTGQWDITQLTYPPACTLLTIA-------IAIKLGLTPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIALALITSPSLGLALAlvfviagIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  119 LQGSPLTTAMLLSTLMKLPPTTL---LLITSHSLS----HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMM 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFdeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180
                 ....*....|....*....|....*....
gi 56387571  192 ITITYNPKLTLLAFFIYTLmttsIFLTMN 220
Cdd:PRK02504 317 IGLVAGTEAGYASMVFYLL----AYLFMN 341
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-220 1.06e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 68.88  E-value: 1.06e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   51 RAIEAATKYFLVQAAASALVL--FSST--INAQHTGQWDI------TQLTYPPAC----TLLTIAIAIKLGLTPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  117 EVLQGSPLTTAMLLSTLMKLP----PTTLLLITSHSLS---HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSnewHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190
                 ....*....|....*....|....*....|..
gi 56387571  190 MMI-TITYNPKLTLLAFFIYTLmttsIFLTMN 220
Cdd:CHL00049 319 VIIgIIVGDSNDGYASMITYML----FYIFMN 346
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-192 3.20e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 67.03  E-value: 3.20e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  38 LSIIPM---ISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQW-----DITQLTYPPA-----CTLLTIAIAI 104
Cdd:COG1008 142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571 105 KLGLTPFHFWFPEVLQGSPLTTAMLLS-TLMK----------LPpttLLLITSHSLSHILLTtMSIMSIALGGWMGLNQT 173
Cdd:COG1008 222 KVPMFPFHTWLPDAHVEAPTAGSVLLAgVLLKmggygllrfaLP---LFPEASAYFAPLLAA-LGVIGIIYGALVALAQT 297

                       170
                ....*....|....*....
gi 56387571 174 QTRKIMAFSSISHLGWMMI 192
Cdd:COG1008 298 DLKRLIAYSSVSHMGFVLL 316
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-194 7.79e-10

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 59.83  E-value: 7.79e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   38 LSIIPM---ISKSHHPRAIEAATKYFLVQAAASALVLFS----STINAQHTGQWDITQLTYPP----ACTLL----TIAI 102
Cdd:PRK05846 142 AMLIPMyflIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPlppgVQYWLflafFIAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  103 AIKLGLTPFHFWFPEVLQGSPLTTAMLLS-TLMKLPPTTLLLI-------TSHSLSHILLTtMSIMSIALGGWMGLNQTQ 174
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVQAPTAGSVLLAgILLKMGAYGLLRFslplfpdASHEFAPIIIT-LGVIAIIYGALVALAQTD 300

                        170       180
                 ....*....|....*....|
gi 56387571  175 TRKIMAFSSISHLGWMMITI 194
Cdd:PRK05846 301 IKKLIAYSSISHMGFVTLGI 320
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 1.07e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 56.49  E-value: 1.07e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571    50 PRAIEAATKYFLVQAAASALVLFSSTINA-QHTGQWDIT---QLTYPPACTLLT-----IAIAIKLGLTPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYfLGGGTFDLLellNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   121 GSPLTTAMLLS-TLMKLPPTTLLLI-------TSHSLSHILLtTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMI 192
Cdd:TIGR01972 232 EAPTAGSVILAgVLLKMGTYGFLRFnlplfpdASLYFAPVLA-ALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310


                  ..
gi 56387571   193 TI 194
Cdd:TIGR01972 311 GI 312
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 6.05e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.11  E-value: 6.05e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   33 LEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQLT--YPPACTLLT------IAIAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  105 KLGLTPFHFWFPEVLQG-SPLTTAMLLSTLMKLPPTTLLLITSH---------SLSHILLTTMSIMSIALGGWMGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTvfggdfrfaLGLGWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  175 TRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYT----LMTTSIFLT----MNTTNALKLSTLMTSWTKTPMLNTTLML 246
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 56387571  247 TLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAY 298
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-210 1.24e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 53.22  E-value: 1.24e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   13 ILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAA------SALVLFSSTINAQHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   87 TQLT-----YPPACTLLT-----IAIAIKLGLTPFHFWFPEVLQGSP-LTTAMLLSTLMKLPPTTLLLITS-------HS 148
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 56387571  149 LSHILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTL 210
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 1.48e-07

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 52.73  E-value: 1.48e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   55 AATKYFLVQAAASALVLFSSTINAQHTGQ--WDITQLT---YPPACTLLT-----IAIAIKLGLTPFHFWFPEVLQGSPL 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56387571  125 TTAMLLS-TLMKLPPTTLLLITSHSLS--HI----LLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITI 194
Cdd:PRK12561 218 PVSMILAgVLLKMGGYALIRFNVQMLPdaHVyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-275 7.04e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.77  E-value: 7.04e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   34 EINTLS---IIPMISKshhpRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDI----------TQLTYPPACTLLTI 100
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFadisqglindTSTGFALIVFLFLL 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  101 AIAI-KLGLTPFHFWFPEVLQGSPLT-TAMLLSTLMKLP-----------PTTLLLIT-----SHSLSHILLTTMSIMSI 162
Cdd:PRK08668 204 AFGVaKAGIFPLHVWAPDAYSEAPQSfSAVLSGQLSKLGaygfllvlyvlPGTKLFSEfgtyrGVPLFNYILAWLGNISI 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  163 ALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYnpkLTLLAF-------FIYTLMTTSIFLTMNT----TNALKLSTLM 231
Cdd:PRK08668 284 IVGTLMAILQEDIKKLIAYSSVANGGYILVGLGL---GTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEMG 360

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 56387571  232 TSWTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEM 275
Cdd:PRK08668 361 GLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 23-211 1.19e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 49.93  E-value: 1.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   23 SNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSS--------------------TINAQHTG 82
Cdd:PRK06458 127 SNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvmgdgemailwTELLKHAS 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   83 QWDITQLTYppACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMkLPPTTLLLITSHSLSH---------IL 153
Cdd:PRK06458 207 LLDPTLMKL--AFVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVL-LNVALYAVLRYYILIDaaigsdfpgRL 283

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 56387571  154 LTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLM 211
Cdd:PRK06458 284 LLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLN 341
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 1.97e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 46.36  E-value: 1.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   48 HHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQLTYPPAC--------------TLLTIAIAIKLGLTPFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitlILIFIGAAAKSAQGPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  114 WFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLS-----HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSgteawFILVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                 ....*...
gi 56387571  189 WMMITITY 196
Cdd:PRK12649 316 YLMTMYGY 323
PRK12650 PRK12650
DUF4040 family protein;
29-210 4.67e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.42  E-value: 4.67e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   29 AWaglEINTLSIIPMISKSHhPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQLTYPPA---CTLLTIAIAIK 105
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaeKPGLTTVVAVL 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  106 LGLT--------PFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLS-----HILLTTMSIMSIALGGWMGLNQ 172
Cdd:PRK12650 214 IAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHdvavwNWLLIIVGMITALMGAVFAVQK 293

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 56387571  173 TQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTL 210
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTL 331
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 55-204 1.24e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 43.76  E-value: 1.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   55 AATKYFLVQAAASALVLFSSTINAQHTGQWDITQL-TYPPACTLLTIAIAI-------KLGLTPFHFWFPEVLQGSPLTT 126
Cdd:PRK12644 158 AALQALLVTTAGGLAMLVGIIILGQAAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVS 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  127 AMLLSTLM---------KLPPTtllliTSHSLS-HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITY 196
Cdd:PRK12644 238 AYLHAAAMvkagiylvaRLAPG-----FADVPVwRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGI 312


                 ....*...
gi 56387571  197 NPKLTLLA 204
Cdd:PRK12644 313 GTRDAALA 320
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-192 2.27e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 2.27e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  48 HHPRAIEAATKYFLVQAA------ASALVLFS-------STINAQhtGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFW 114
Cdd:COG1009 156 EKPSARRAARKAFLVTRVgdlgllLGILLLGAiagtlnfSELLAA--APTILSSPLLTLILLLLLLGAFGKSAQFPLHFW 233

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571 115 FPEVLQG----SPL----T--TA-----MLLSTLMKLPPTTLLLITShslshILLTTMsimsiALGGWMGLNQTQTRKIM 179
Cdd:COG1009 234 LPDAMEGptpvSALlhaaTmvKAgvyllARLSPLFALSPVWLTVVAI-----IGAITA-----LFAALIALAQTDIKRVL 303

                       170
                ....*....|...
gi 56387571 180 AFSSISHLGWMMI 192
Cdd:COG1009 304 AYSTVSQLGYMFL 316
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
98-204 2.66e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.76  E-value: 2.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   98 LTIAIAIKLGLTPFHFWFPEV-LQGSPLTTAMLLSTLMKLPPTTLL------LITSHSLSHILLTTMSIMSIALGGWMGL 170
Cdd:PRK06473 211 ILVGFGIKIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAI 290

                         90       100       110
                 ....*....|....*....|....*....|....
gi 56387571  171 NQTQTRKIMAFSSISHLGWMMITITYNPKLTLLA 204
Cdd:PRK06473 291 AQKDMKKMVAYSSIGHMGYILLAAAAATPLSILA 324
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 3.91e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 42.01  E-value: 3.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   33 LEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASALVLFSSTInaqHTGQWDITQLTYPP-------------ACTLL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL---LYGQYGTLNMAYLAvkmsenptvvakiALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   99 TIAIAIKLGLTPFHFWFPEVLQGSP--LTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIMSI------ALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSIYGPAINLATVGWVIIIlgcltmFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  171 NQTQTRKIMAFSSISHLGWMM------ITITYNPKLTLLAF----------FIYTLMTTSIFLT-------MNTTNALKL 227
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLlglgvgLAALGDPAMASYGEialaggiyhiVNHALYKALLFLTagaviyeTGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 56387571  228 STLMTswtKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLI 266
Cdd:PRK08376 387 GGLAR---TMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
ndhD CHL00011
NADH dehydrogenase subunit 4
 100-194 7.37e-04

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 41.08  E-value: 7.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  100 IAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLS-TLMKLPPTTLLLITSHSLSH---------ILLTTMSIMSIALggwMG 169
Cdd:CHL00011 219 IAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAgILLKMGAYGLIRINMELLPHahsifspwlVIVGAIQIIYAAS---TS 295

                         90       100
                 ....*....|....*....|....*
gi 56387571  170 LNQTQTRKIMAFSSISHLGWMMITI 194
Cdd:CHL00011 296 LGQRNLKKRIAYSSVSHMGFIIIGI 320
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 9.82e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 40.85  E-value: 9.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   55 AATKYFLVQA--------AASALVLFSSTINAQHTgqwDITQLTYPPACTLLT-----IAIAIKLGLTPFHFWFPEVLQG 121
Cdd:PRK02546 166 AATKFILYTAgsslfillAALAMAFYGDTPTFDMT---ALAAKDFGLGFQLLCyagllIAYGVKLPIVPLHTWLPDAHGE 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  122 SPLTTAMLLS-TLMKLPPTTLL------LITSHSLSHILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITI 194
Cdd:PRK02546 243 ATAPVHMLLAgILLKMGGYALLrmnagmLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGI 322
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 100-194 1.14e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.68  E-value: 1.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  100 IAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLS-TLMKLPPTTLLLIT-------SHSLSHILLtTMSIMSIALGGWMGLN 171
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAgILLKLGGYGLVRLSwpilplgAQNLAPAVI-AMGIVGIVYGSFATCR 316

                         90       100
                 ....*....|....*....|...
gi 56387571  172 QTQTRKIMAFSSISHLGWMMITI 194
Cdd:MTH00226 317 QIDVKRLVAYSSVAHMGLVSITL 339
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-194 1.27e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.48  E-value: 1.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   55 AATKYFLVQAAASALVLFSSTINAQHTGQWDITQLTYPPAC-----TLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAML 129
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 56387571  130 LSTLM-KLPPTTLLLITSHSLS-----HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITI 194
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSpelwwGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGI 313
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
96-203 2.59e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 39.70  E-value: 2.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   96 TLLTIAIAIKLGLTPFHFWFPEV-LQGSPLTTAMLLSTLMKLPPTTL------LLITSHSLSHILLTTMSIMSIALGGWM 168
Cdd:PRK07363 209 TGLLLGFGIKIPLVPLHTWLPDAyTEASPAVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALS 288

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 56387571  169 GLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLL 203
Cdd:PRK07363 289 AIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-272 6.54e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.18  E-value: 6.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571   33 LEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQL-----------TYPPACTLLTIA 101
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMfliiqdlptnrAIQIGVLFIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  102 IAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSH-----------ILLTTMSIMSIALGGWMGL 170
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVFKanfvfttlpfnNVFMILAALAIVFGSVLAI 298

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387571  171 NQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIY----TLMTTSIFLTMNTT----NALKLSTLMTSWTKTPMLNT 242
Cdd:PRK12662 299 LSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSIsyhfGTTKLEDCLNLWKSMPKITL 378

                        250       260       270
                 ....*....|....*....|....*....|
gi 56387571  243 TLMLTLLSLSGLPPLTGFLPKWLIMQELIK 272
Cdd:PRK12662 379 AFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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