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Conserved domains on  [gi|58339287|gb|AAW70576|]
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cytochrome b, partial (mitochondrion) [Nycticebus menagensis]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-142 4.85e-108

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 311.96  E-value: 4.85e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    1 MTNIRKNHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339287   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-142 4.85e-108

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 311.96  E-value: 4.85e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    1 MTNIRKNHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339287   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-142 1.72e-60

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 184.88  E-value: 1.72e-60
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287   9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 58339287  89 MFFFCLFIHIGRGLYYGSF--TLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-142 3.40e-53

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 166.02  E-value: 3.40e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    18 FIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIHANGASMFFFCLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 58339287    98 IGRGLYYGSF--TLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-142 2.27e-51

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 167.27  E-value: 2.27e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287   1 MTNIRKNHPLMKIIN---------HSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICR 71
Cdd:COG1290   1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 58339287  72 DVNYGWIIRYIHANGASMFFFCLFIHIGRGLYYGSFT----LLdtWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:COG1290  81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-142 4.85e-108

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 311.96  E-value: 4.85e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    1 MTNIRKNHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339287   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
CYTB MTH00131
cytochrome b; Provisional
 1-142 1.56e-93

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 274.99  E-value: 1.56e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    1 MTNIRKNHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339287   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWG 142
CYTB MTH00119
cytochrome b; Provisional
 1-142 6.70e-93

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 273.32  E-value: 6.70e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    1 MTNIRKNHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339287   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWG 143
CYTB MTH00074
cytochrome b; Provisional
 1-142 2.64e-91

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 269.24  E-value: 2.64e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    1 MTNIRKNHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339287   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWG 143
CYTB MTH00191
cytochrome b; Provisional
 4-142 2.25e-89

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 264.08  E-value: 2.25e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    4 IRKNHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 58339287   84 ANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWG 139
CYTB MTH00156
cytochrome b; Provisional
 11-142 2.96e-86

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 255.48  E-value: 2.96e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287   11 MKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 58339287   91 FFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWG 132
CYTB MTH00034
cytochrome b; Validated
 4-142 8.53e-84

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 250.39  E-value: 8.53e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    4 IRKNHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 58339287   84 ANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWA 142
CYTB MTH00145
cytochrome b; Provisional
 1-142 4.80e-83

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 248.28  E-value: 4.80e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    1 MTNIRKNHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339287   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWG 143
CYTB MTH00016
cytochrome b; Validated
 4-142 6.85e-79

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 237.65  E-value: 6.85e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    4 IRKNHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIH 83
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 58339287   84 ANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00022
cytochrome b; Validated
 4-142 4.62e-72

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 220.34  E-value: 4.62e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    4 IRKNHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 58339287   84 ANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWG 141
CYTB MTH00224
cytochrome b; Provisional
 4-142 1.33e-71

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 219.02  E-value: 1.33e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    4 IRKNHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 58339287   84 ANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00053
cytochrome b; Provisional
 4-141 5.57e-68

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 209.95  E-value: 5.57e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    4 IRKNHPLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 58339287   84 ANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFW 141
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFW 142
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-142 1.72e-60

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 184.88  E-value: 1.72e-60
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287   9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 58339287  89 MFFFCLFIHIGRGLYYGSF--TLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
CYTB MTH00033
cytochrome b; Provisional
 19-142 8.01e-54

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 173.59  E-value: 8.01e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287   19 IDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIHANGASMFFFCLFIHI 98
Cdd:MTH00033  16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 58339287   99 GRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00033  96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWA 139
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-142 3.40e-53

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 166.02  E-value: 3.40e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287    18 FIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIHANGASMFFFCLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 58339287    98 IGRGLYYGSF--TLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-142 2.27e-51

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 167.27  E-value: 2.27e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287   1 MTNIRKNHPLMKIIN---------HSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICR 71
Cdd:COG1290   1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 58339287  72 DVNYGWIIRYIHANGASMFFFCLFIHIGRGLYYGSFT----LLdtWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:COG1290  81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
CYTB MTH00086
cytochrome b; Provisional
 12-142 2.18e-44

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 148.55  E-value: 2.18e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287   12 KIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 58339287   92 FCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWA 131
CYTB MTH00046
cytochrome b; Validated
 10-141 4.67e-32

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 116.24  E-value: 4.67e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287   10 LMKIINHSFIDLPAPSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 58339287   90 FFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFW 141
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYW 132
PRK03735 PRK03735
cytochrome b6; Provisional
 33-141 2.09e-23

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 90.93  E-value: 2.09e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287   33 FGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIHANGASMFFFCLFIHIGRGLYYGSFTLLD- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110
                 ....*....|....*....|....*....|.
gi 58339287  112 -TWNIGIMLLLAVMATAFMGYVLPWGQMSFW 141
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 24-141 1.01e-18

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 78.22  E-value: 1.01e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339287   24 PSNISSWWNFGSLLGLCLMIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYIHANGASMFFFCLFIHIGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 58339287  104 YGSFTLLD--TWNIGIMLLLAVMATAFMGYVLPWGQMSFW 141
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-142 2.59e-10

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 55.33  E-value: 2.59e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 58339287    88 SMFFFCLFIHIGRGLYYGSF--TLLDTWNIGIMLLLAVMATAFMGYVLPWGQMSFWG 142
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYrkPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTG 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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