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Conserved domains on  [gi|58339295|gb|AAW70580|]
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cytochrome b, partial (mitochondrion) [Nycticebus javanicus]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-142 9.76e-108

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 311.19  E-value: 9.76e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    1 MTNIRKNHPLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339295   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-142 9.76e-108

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 311.19  E-value: 9.76e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    1 MTNIRKNHPLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339295   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-142 2.77e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 179.49  E-value: 2.77e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295   9 PLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 58339295  89 MFFFCLFIHIGRGLYYGSF--TLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-142 1.57e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 164.48  E-value: 1.57e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    18 FVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIHANGASMFFFCLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 58339295    98 IGRGLYYGSF--TLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
16-142 6.03e-51

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 166.12  E-value: 6.03e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295  16 HSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIHANGASMFFFCLF 95
Cdd:COG1290  25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 58339295  96 IHIGRGLYYGSFT----LLdtWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:COG1290 105 LHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-142 9.76e-108

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 311.19  E-value: 9.76e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    1 MTNIRKNHPLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339295   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
CYTB MTH00131
cytochrome b; Provisional
 1-142 1.15e-92

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 272.68  E-value: 1.15e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    1 MTNIRKNHPLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339295   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWG 142
CYTB MTH00119
cytochrome b; Provisional
 1-142 1.86e-92

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 272.16  E-value: 1.86e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    1 MTNIRKNHPLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339295   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWG 143
CYTB MTH00074
cytochrome b; Provisional
 1-142 6.63e-92

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 270.78  E-value: 6.63e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    1 MTNIRKNHPLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339295   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWG 143
CYTB MTH00191
cytochrome b; Provisional
 4-142 9.69e-89

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 262.16  E-value: 9.69e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    4 IRKNHPLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 58339295   84 ANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWG 139
CYTB MTH00156
cytochrome b; Provisional
 11-142 4.29e-86

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 255.09  E-value: 4.29e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295   11 MKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 58339295   91 FFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWG 132
CYTB MTH00034
cytochrome b; Validated
 4-142 4.45e-83

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 248.47  E-value: 4.45e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    4 IRKNHPLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 58339295   84 ANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWA 142
CYTB MTH00145
cytochrome b; Provisional
 1-142 1.69e-82

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 246.74  E-value: 1.69e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    1 MTNIRKNHPLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 58339295   81 YIHANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWG 143
CYTB MTH00016
cytochrome b; Validated
 4-142 3.42e-79

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 238.42  E-value: 3.42e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    4 IRKNHPLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIH 83
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 58339295   84 ANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00022
cytochrome b; Validated
 4-142 1.21e-70

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 216.49  E-value: 1.21e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    4 IRKNHPLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 58339295   84 ANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWG 141
CYTB MTH00224
cytochrome b; Provisional
 4-142 1.72e-70

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 216.33  E-value: 1.72e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    4 IRKNHPLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 58339295   84 ANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00053
cytochrome b; Provisional
 4-141 1.98e-67

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 208.41  E-value: 1.98e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    4 IRKNHPLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 58339295   84 ANGASMFFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFW 141
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFW 142
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-142 2.77e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 179.49  E-value: 2.77e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295   9 PLMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 58339295  89 MFFFCLFIHIGRGLYYGSF--TLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
CYTB MTH00033
cytochrome b; Provisional
 19-142 7.07e-55

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 176.28  E-value: 7.07e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295   19 VDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIHANGASMFFFCLFIHI 98
Cdd:MTH00033  16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 58339295   99 GRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00033  96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWA 139
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-142 1.57e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 164.48  E-value: 1.57e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295    18 FVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIHANGASMFFFCLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 58339295    98 IGRGLYYGSF--TLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
16-142 6.03e-51

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 166.12  E-value: 6.03e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295  16 HSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIHANGASMFFFCLF 95
Cdd:COG1290  25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 58339295  96 IHIGRGLYYGSFT----LLdtWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:COG1290 105 LHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
CYTB MTH00086
cytochrome b; Provisional
 19-142 4.36e-44

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 147.78  E-value: 4.36e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295   19 VDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIHANGASMFFFCLFIHI 98
Cdd:MTH00086   8 VTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHI 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 58339295   99 GRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:MTH00086  88 FKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWA 131
CYTB MTH00046
cytochrome b; Validated
 10-141 2.78e-31

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 114.31  E-value: 2.78e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295   10 LMKIISHSFVDLPAPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 58339295   90 FFFCLFIHIGRGLYYGSFTLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFW 141
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYW 132
PRK03735 PRK03735
cytochrome b6; Provisional
 33-141 1.94e-23

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 90.93  E-value: 1.94e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295   33 FGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIHANGASMFFFCLFIHIGRGLYYGSFTLLD- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110
                 ....*....|....*....|....*....|.
gi 58339295  112 -TWNIGIMLLFAVMATAFMGYVLPWGQMSFW 141
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 24-141 2.19e-17

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 74.76  E-value: 2.19e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58339295   24 PSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYIHANGASMFFFCLFIHIGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 58339295  104 YGSFTLLD--TWNIGIMLLFAVMATAFMGYVLPWGQMSFW 141
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-142 3.46e-10

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 54.94  E-value: 3.46e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 58339295    88 SMFFFCLFIHIGRGLYYGSF--TLLDTWNIGIMLLFAVMATAFMGYVLPWGQMSFWG 142
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYrkPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTG 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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